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Report for CCDS79339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79339.1 Public Mus musculus 14 Stmn4 23 108 98 CCDS HistoryNCBI Gene:56471Re-query CCDS DB by CCDS ID:79339.1Re-query CCDS DB by GeneID:56471See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120229.7 ENSMUSP00000113759.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120229.7Link to Ensembl Protein Viewer:ENSMUSP00000113759.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120229Re-query CCDS DB by Protein ID:ENSMUSP00000113759
Original member NCBI NM_001310522.1 NP_001297451.1 Updated not alive Link to Nucleotide Sequence:NM_001310522.1Link to Protein Sequence:NP_001297451.1Re-query CCDS DB by Nucleotide ID:NM_001310522Re-query CCDS DB by Protein ID:NP_001297451
Current member NCBI NM_001310522.2 NP_001297451.1 Accepted alive Link to Nucleotide Sequence:NM_001310522.2Link to Protein Sequence:NP_001297451.1Re-query CCDS DB by Nucleotide ID:NM_001310522Re-query CCDS DB by Protein ID:NP_001297451Link to BLAST:NP_001297451.1

Chromosomal Locations for CCDS 79339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66354433 66354445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66355586 66355681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66356269 66356349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66356709 66356917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66357846 66358037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66361075 66361134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGACTCTTGCAGCCTATAAGGAGAAGATGAAGGAACTCCCACTAGTGTCTCTGTTCTGCTCTTGCTTCT
TGTCTGATCCCCTGAATAAATCATCCTACAAATATGAAGGCTGGTGTGGGAGACAGTGTAGGAGGAAAGG
TCAAAGCCAGCGGAAAGGCAGTGCTGACTGGAGAGAAAGAAGAGAACAGGCAGATACAGTAGACCTGAAC
TGGTGCGTCATCTCTGATATGGAAGTCATCGAGCTGAACAAGTGCACCTCGGGCCAGTCCTTTGAAGTCA
TCTTGAAGCCACCTTCCTTTGACGGGGTGCCTGAGTTTAATGCCTCCCTCCCAAGACGGCGAGACCCATC
ATTAGAAGAGATTCAGAAGAAGCTAGAAGCAGCAGAGGAGCGAAGGAAGTACCAGGAAGCTGAACTCCTG
AAACACCTCGCGGAGAAACGAGAGCACGAGCGAGAGGTGATCCAGAAAGCTATCGAAGAAAACAATAACT
TCATCAAGATGGCAAAAGAGAAGCTGGCCCAGAAGATGGAGTCCAATAAGGAGAACCGGGAGGCCCATCT
GGCTGCCATGTTGGAGCGGCTGCAAGAGAAGGACAAGCACGCAGAGGAGGTGCGGAAAAACAAGGAGCTG
AAGGAAGAGGCCTCCAGGTAA

Translation (216 aa):
MTLAAYKEKMKELPLVSLFCSCFLSDPLNKSSYKYEGWCGRQCRRKGQSQRKGSADWRERREQADTVDLN
WCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELL
KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL
KEEASR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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