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Report for CCDS79360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79360.1 Public Mus musculus 15 Skp2 23 108 98 CCDS HistoryNCBI Gene:27401Re-query CCDS DB by CCDS ID:79360.1Re-query CCDS DB by GeneID:27401See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190131.1 ENSMUSP00000139997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190131.1Link to Ensembl Protein Viewer:ENSMUSP00000139997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190131Re-query CCDS DB by Protein ID:ENSMUSP00000139997
Original member Current member NCBI NM_001285980.1 NP_001272909.1 Accepted alive Link to Nucleotide Sequence:NM_001285980.1Link to Protein Sequence:NP_001272909.1Re-query CCDS DB by Nucleotide ID:NM_001285980Re-query CCDS DB by Protein ID:NP_001272909Link to BLAST:NP_001272909.1

Chromosomal Locations for CCDS 79360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 9113654 9113867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9116861 9116968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9117091 9117142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9121552 9121682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9122237 9122335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9123870 9124004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9125060 9125203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9127886 9127997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9139432 9139606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGGTGTCTCGGCCTTGGAGAAGGAGGAGGTGGACAGTGAGAACATCCCACATGGACTGCTCTCAAACC
TCGGCCACCCCCAGAGCCCTCCAAGGAAACGAGTCAAGGGCAAAGGGAGTGACAAAGACTTTGTGATCAT
CCGTCGGCCGAAGCTTAGTCGGGAGAACTTTCCAGGTGTCTCCTGGGACTCCCTTCCAGATGAGCTGCTC
CTTGGGATCTTTTCCTGTCTGTGCCTCCCTGAGCTGCTGAGAGTCTCGGGCGTTTGCAAGAGGTGGTACC
GCCTCTCGCTCGATGAGTCTCTCTGGCAGTCCCTCGACCTCGCGGGTAAAAATCTGCACCCAGACGTGAC
TGTGCGCTTGCTCTCCCGCGGGGTGGTCGCCTTCCGCTGCCCTCGGTCCTTTATGGAGCAGCCGCTGGGT
GAAAGCTTCAGCTCTTTCCGGGTACAGCACATGGACCTGTCGAACTCAGTGATAAATGTGTCGAACCTCC
ATAAGATTCTGTCCGAGTGCTCCAAGCTGCAGAATCTAAGCCTGGAAGGCCTGCAGCTCTCAGACCCCAT
TGTCAAGACTCTTGCACAGAATGAAAACTTGGTGCGACTAAACCTTTGTGGGTGCTCTGGGTTTTCTGAA
TCTGCCGTGGCGACTCTGCTAAGCAGCTGCTCCAGACTGGATGAGCTAAATCTCTCCTGGTGCTTTGACT
TCACTGAAAAGCACGTGCAAGCGGCTGTGGCACATTTACCAAACACCATCACCCAGCTGAACCTCAGCGG
CTACCGAAAGAACCTCCAGAAAACAGATCTTTGTACCATAATTAAACGATGCCCCAACCTCATCCGCCTC
GACTTAAGTGACAGTATCATGCTAAAGAATGACTGCTTTCCAGAATTTTTTCAACTCAACTACCTCCAAC
ACCTCTCGCTCAGCCGGTGCTATGATATAATACCTGATACTCTACTTGAACTTGGAGAAATTCCTACACT
AAAAACGCTACAAGTTTTTGGAATCGTGCCAGAGGGAACCCTTCAGCTACTGAGGGAAGCTCTTCCTCGG
CTGCAGATTAACTGCGCCTATTTCACCACCATTGCAAGGCCAACTATGGACAGCAAGAAGAACCTGGAGA
TTTGGGGTATCAAGTGCCGACTGACTCTGCAAAAGCCCAGTTGTCTATGA

Translation (389 aa):
MGVSALEKEEVDSENIPHGLLSNLGHPQSPPRKRVKGKGSDKDFVIIRRPKLSRENFPGVSWDSLPDELL
LGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQSLDLAGKNLHPDVTVRLLSRGVVAFRCPRSFMEQPLG
ESFSSFRVQHMDLSNSVINVSNLHKILSECSKLQNLSLEGLQLSDPIVKTLAQNENLVRLNLCGCSGFSE
SAVATLLSSCSRLDELNLSWCFDFTEKHVQAAVAHLPNTITQLNLSGYRKNLQKTDLCTIIKRCPNLIRL
DLSDSIMLKNDCFPEFFQLNYLQHLSLSRCYDIIPDTLLELGEIPTLKTLQVFGIVPEGTLQLLREALPR
LQINCAYFTTIARPTMDSKKNLEIWGIKCRLTLQKPSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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