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Report for CCDS79611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79611.1 Public Mus musculus 18 Prob1 23 108 98 CCDS HistoryNCBI Gene:381148Re-query CCDS DB by CCDS ID:79611.1Re-query CCDS DB by GeneID:381148See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190196.4 ENSMUSP00000140465.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190196.4Link to Ensembl Protein Viewer:ENSMUSP00000140465.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190196Re-query CCDS DB by Protein ID:ENSMUSP00000140465
Original member Current member NCBI NM_001270646.2 NP_001257575.1 Accepted alive Link to Nucleotide Sequence:NM_001270646.2Link to Protein Sequence:NP_001257575.1Re-query CCDS DB by Nucleotide ID:NM_001270646Re-query CCDS DB by Protein ID:NP_001257575Link to BLAST:NP_001257575.1

Chromosomal Locations for CCDS 79611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35652167 35655199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3033 nt):
ATGCTGACTGCGCTCGCCCCGCTAGCCCTTCCTGGGCTCTCAAGGCGGCTGCCTGCCCCAGCGGGGCGTC
AGGACTCGTCCGGTTCGTCCGGCTCCTACCACACAGCTCCGGGTTCTCCGGAGCCCCCGGACGTTGGGCC
GGACACAGAAGGCCGGGGGACTTGGCTCTGGGTGGCTCCTGGGCGGGGGGCGGGCGCGCAGCCTGTCCTG
TCCGTCAGCGCCCAGAATAGCCGCCAGCAGCACGGCTCCGGCTCGGGTTTCCCGCGAGGCCCGGGCTCCG
GCCCGCTGCCGCCCCGGCCCCAGCTGCGCATGCTGCCGTCGGGGGAGATGGAAGTCATCTTCGGCGCGGG
GCCTCTGTTCAACCGCTCCGACGCGGAGGATCTGCAGGAGCAACAGCTCATGGCGCCTACCTTCAGCAGT
CCCCAGCTGCCCGGGCCAGCGTCTCCTGCCTCTGTCTCATCGCAGCCGCAGGTCCCCGACGGAGGCTCTC
GCTGGGCCACCTACCTGGAGCTGCCGCCCCGCGAGCCGAGTCCTGCCGTCTCAGGCCAGTACGAGTGTGT
GGAGGTGGCCCTGGAGGAGCGCAGCGCGCCCGTTAGACCCCGCACTGTGCCGAAACGTCAGATCGAGCTG
CGTCCGCGGCCTCGGAGTCCCTCGCAGGACAGTCGCGCGCCGCGTCCCCGACTGCTCCTGCGCACGGGCT
CCCTGGACGAGTCTCTGAGCCGCTTGCAGGCCGCCGCGGGCATCGTGCAGACGGCGCTGGCTAGAAAACT
AGGCTCTGCGGTCCCAGCCCCCAGCAACGTCACTTTTAAGTCTACCGCCAAGCCAGAATCCACGACGAAC
TCTCAGGAGACGACAGACAGCACTCGTGTGCTCCTGGAAGAGGCTAAGTCTCGGCCACCCCGCGCGCACG
ATAATTCCTCCTCTGCCAGAGTCCCGCGGCCTTGGCCTAGCCTCCGAGAGCGAGCGATTCGGCGGGACAA
GCCGGCGCCCGGGACCGAGCCTCTGGGTCCAGTTAGTTCCAGCATCTTTCTGCAGTCAGAGGAGAAACCT
CATCAGGCTTACAAACAGGAATCCAAGACCCAGTTTCCCCGTGAGACTCCTGATAGAACCGTGCCGAGAG
CACGGAGTCCTCCTTTTCATTCTAGAGGTTCCCGGGTGGTTCCCAGTAGGGTTGTGAGGCCCAGGAGCCC
CTCTCCTCCGCAGCAGGCTCCAAACGGGTCTCCCCACAACCCCCCACAACCTTCTAAGATTGTTTGGAGA
CGGAGCAGCCCGGCCTTCCCTGGCGGCACATCCTCTGCGTGGGAAAATCGGAATGCTTCCGTCGAGGAAG
TCGTCAGCAGAAGGACCCCTTCCCCACCACCACTTCCCCAATGGACTCAGGGTGTCGCTAGAGTTGGGAA
CCCATGTCCTGAAGCTCCTCTTGTGTGGAAGGTTCCGAATTCGAGAGGCGGAGATGCAGTAGGGCTGAGT
AGGGACTCGTCGCTGCCAGCCCTGCTCCCGCGGGAAGCACCTCATCCTATTGAAACGCGTACCCCATCTC
CCGGAGAGACTTGGAGTCCTGTTGTGCAGGGTGCATCGACGGCACTGCATCAGGAAGCTATGAACGGTCT
AACCCAGGAGCTGGAGCCGCCTACACCATCAGCACCCGCGACTCCAGAGCTCACAGAGGCTCTGTGTCTG
CTCTCACTGGAAAATGCGGGTATCGCCGTCAGAGGCGGTCAACGGTCTCCAGATGTGGATACACCGGAAC
AGCCCCGAAGTCACCTCACAAGCACTCTGGACGACGATGTGTGCCCAGAAGCCGTGGGCTCGGGAGAAGC
GGCTTCTGAACGCCCGCGCGTGACCATTCCGCGGCCGCGAGACGTGCGCAAGATGGTTAAGACTACTTAT
GCACCAAGCTTCCCTGCAGGGACCCCAGGCTCCGGGCTTCCCGCGCCTCCTGCGGACACCTGCGGGGAGG
ACGGTGATGCATCCAAAACTCACAAGCTCCCCGCACTTGAGTCGCCCGCCCCGGCTCATTACACTTCCAT
TTTTCTCAAGGACTTTCTGCCTGTGGTACCTCATCCCTACGAGTCACCAGAGCCTTCACTCCATGCAACC
CCTAAGGATGCCTCCCAGTCCAGCGGGGTCCCGAGGCGGCGGGCAGAGAACAGCACCGCGAAGCCTTTCG
CTCGAAGTGAGATCCGCTTGCCTGGCGCTCTAGCTTTCGGCCAGCGGCGGGAGAAAACCCCGAGTGTCCA
AAGACGCGGTCCTGGAGGAGAAAACCCGGATGCTGAGGCCCAGCGCCTGGTCCGGGACCCTGAGGGTCGG
ACCAGCCCTTTAGGAGGCGCTCGCACCTCAACCCAATGTTCCCCTTTAGAGTCGACAGGGACGCGACCAC
CTCGCCCCGGCTCCCCGCAGGCGTGTCCAAACTCGAGCCTTAGGGCAGCGCCGGAATTGGAGACACCGCT
TGTGGCTCCTGCAACTGCGGTCCAGGCGCCCCTACTTCCCGATCATCCGGCGACGGCAGCCAGGGCCGCT
GCACCCTTCCCGCGAGCTGCTTCTGCGCCTCCCACCGACCGGCTCCCCCCTGCATCTTCCCTGGGGCGGA
GGCCTCCGGGAGCCGCCCCCGCGGGGAAGGTCCTTGTAGACCCGGAGAGCGGCCGGTACTACTTTGTGGA
GGCGCCGAGGCAGCCGAGGCTGCGACTACTTTTCGATCCCGAGAGCGGGCAGTACGTGGAAGTACTGCTG
CCACCCTCGCCCTCTCCCTCCCGGCAGCCACGCCAGCCCTATGCCCCACTGGCCCTAGGGCCCGGCCTCT
ACCCGCCCGCCTATGGGCCTATCTCTGGTCCATCACTGTCGCCGCTGTCCCCCAACCTGTCGGCCCTTGG
TAGTCTCCAGCTACCTTGGGCTCCTGAGGCTGGACCCCTGGAGGGAATGTATTACATGCCCTTGAGCGGG
ACCCCTAGTCCCGCACCACCAATGCTCTTCTGTGCCCCACCCTCCAGTTCTGGTCCCATCCAGTCCAGCA
AGGGTTCTGTGTTTCCTTTGTGA

Translation (1010 aa):
MLTALAPLALPGLSRRLPAPAGRQDSSGSSGSYHTAPGSPEPPDVGPDTEGRGTWLWVAPGRGAGAQPVL
SVSAQNSRQQHGSGSGFPRGPGSGPLPPRPQLRMLPSGEMEVIFGAGPLFNRSDAEDLQEQQLMAPTFSS
PQLPGPASPASVSSQPQVPDGGSRWATYLELPPREPSPAVSGQYECVEVALEERSAPVRPRTVPKRQIEL
RPRPRSPSQDSRAPRPRLLLRTGSLDESLSRLQAAAGIVQTALARKLGSAVPAPSNVTFKSTAKPESTTN
SQETTDSTRVLLEEAKSRPPRAHDNSSSARVPRPWPSLRERAIRRDKPAPGTEPLGPVSSSIFLQSEEKP
HQAYKQESKTQFPRETPDRTVPRARSPPFHSRGSRVVPSRVVRPRSPSPPQQAPNGSPHNPPQPSKIVWR
RSSPAFPGGTSSAWENRNASVEEVVSRRTPSPPPLPQWTQGVARVGNPCPEAPLVWKVPNSRGGDAVGLS
RDSSLPALLPREAPHPIETRTPSPGETWSPVVQGASTALHQEAMNGLTQELEPPTPSAPATPELTEALCL
LSLENAGIAVRGGQRSPDVDTPEQPRSHLTSTLDDDVCPEAVGSGEAASERPRVTIPRPRDVRKMVKTTY
APSFPAGTPGSGLPAPPADTCGEDGDASKTHKLPALESPAPAHYTSIFLKDFLPVVPHPYESPEPSLHAT
PKDASQSSGVPRRRAENSTAKPFARSEIRLPGALAFGQRREKTPSVQRRGPGGENPDAEAQRLVRDPEGR
TSPLGGARTSTQCSPLESTGTRPPRPGSPQACPNSSLRAAPELETPLVAPATAVQAPLLPDHPATAARAA
APFPRAASAPPTDRLPPASSLGRRPPGAAPAGKVLVDPESGRYYFVEAPRQPRLRLLFDPESGQYVEVLL
PPSPSPSRQPRQPYAPLALGPGLYPPAYGPISGPSLSPLSPNLSALGSLQLPWAPEAGPLEGMYYMPLSG
TPSPAPPMLFCAPPSSSGPIQSSKGSVFPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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