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Report for CCDS79830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79830.1 Public Mus musculus 2 Gm13889 23 108 98 CCDS HistoryNCBI Gene:620695Re-query CCDS DB by CCDS ID:79830.1Re-query CCDS DB by GeneID:620695See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148314.2 ENSMUSP00000141051.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148314.2Link to Ensembl Protein Viewer:ENSMUSP00000141051.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148314Re-query CCDS DB by Protein ID:ENSMUSP00000141051
Original member Current member NCBI NM_001145034.1 NP_001138506.1 Accepted alive Link to Nucleotide Sequence:NM_001145034.1Link to Protein Sequence:NP_001138506.1Re-query CCDS DB by Nucleotide ID:NM_001145034Re-query CCDS DB by Protein ID:NP_001138506Link to BLAST:NP_001138506.1

Chromosomal Locations for CCDS 79830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 93956387 93956758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCGGCCGCCAAGCCCGGCGAGCTCATGGGCATCTGCTCCAGCTACCAAGCGGTGATGCCACACTTCG
TGTGCCTGACCGATGAGTTCCCGCAGCCGGTGCGGCCCGCCAAGCTGCCCAAGGGCAAGGGCCGGCTGCG
GCGGCCACGCCAGTCCCGCTTCAAGACGCAGCCGGTGACCTTCGACGAGATCCAGGAGGTGGAGGAGGAG
GGGGTGTCCCCGATGGAGGAGGAGAAGGCCAAGAAGTCGTTCCTGCAGAGCTTGGAGTGCCTGCGCCGCA
GCACGCAGAGCCTGTCGCTGCAGAGGGAGCCGCTCGGCAGCTGCAAACTGAGGAACAGCCTGGACTCCAG
CGACTCCGACTCGGCCCTGTGA

Translation (123 aa):
MAAAKPGELMGICSSYQAVMPHFVCLTDEFPQPVRPAKLPKGKGRLRRPRQSRFKTQPVTFDEIQEVEEE
GVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREPLGSCKLRNSLDSSDSDSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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