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Report for CCDS79849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79849.1 Public Mus musculus 2 Adissp 23 108 98 CCDS HistoryNCBI Gene:67326Re-query CCDS DB by CCDS ID:79849.1Re-query CCDS DB by GeneID:67326See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028800.11 ENSMUSP00000028800.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028800.11Link to Ensembl Protein Viewer:ENSMUSP00000028800.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028800Re-query CCDS DB by Protein ID:ENSMUSP00000028800
Original member Current member NCBI NM_001311138.1 NP_001298067.1 Accepted alive Link to Nucleotide Sequence:NM_001311138.1Link to Protein Sequence:NP_001298067.1Re-query CCDS DB by Nucleotide ID:NM_001311138Re-query CCDS DB by Protein ID:NP_001298067Link to BLAST:NP_001298067.1

Chromosomal Locations for CCDS 79849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131146875 131146975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131147161 131147283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131148156 131148294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131151618 131151760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131153585 131153612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGCTGCAGCCAACAGAGGTGAGTGCTGCAGTAAGCCCAGAGTCCGAAGTATCCGCTTTGCAGCAGGCC
ACGATGCAGAAGGCTCCCAGAGCCACGTCCACTTTGATGAAAAGCTGCATGACTCGGTGGTCATGGTTAC
TCAGGAGAGTGACAACAGCTTCTTAGTCAAGGTTGGCTTCCTGAAGATCCTGCACAGGTATGAGATTACC
TTCACTCTGCCTCCAGTGCGCAGACTGAGCAAGGACATCCGTGAGACCCCTGTCCACAGCTTGCACCTCA
AGCTGCTCAGCGTCACACCCACCTCTGAAGGTTACAGCATCAAGTGTGAGTACTCGGCACACAAAGAAGG
TGTTCTCAAAGAGGAGATGCTCCTGGCCTGCGAGGGTGACATAGGCACCTGTGTGCGTGTGACGGTGCAG
GCGCGGGTCATGGACCGGCACCACGGTACACCCATGCTGCTGGATGGTGTCAAGTGTGTGGGCGCTGAGC
TGGAGTATGACTCGGAACAGAGCGATTGGCTCGGCTTCGACTGA

Translation (177 aa):
MAAANRGECCSKPRVRSIRFAAGHDAEGSQSHVHFDEKLHDSVVMVTQESDNSFLVKVGFLKILHRYEIT
FTLPPVRRLSKDIRETPVHSLHLKLLSVTPTSEGYSIKCEYSAHKEGVLKEEMLLACEGDIGTCVRVTVQ
ARVMDRHHGTPMLLDGVKCVGAELEYDSEQSDWLGFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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