NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79972.1 Public Mus musculus 3 Celf3 23 108 98 CCDS HistoryNCBI Gene:78784Re-query CCDS DB by CCDS ID:79972.1Re-query CCDS DB by GeneID:78784See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200342.4 ENSMUSP00000143344.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200342.4Link to Ensembl Protein Viewer:ENSMUSP00000143344.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200342Re-query CCDS DB by Protein ID:ENSMUSP00000143344
Original member Current member NCBI NM_001289613.2 NP_001276542.1 Accepted alive Link to Nucleotide Sequence:NM_001289613.2Link to Protein Sequence:NP_001276542.1Re-query CCDS DB by Nucleotide ID:NM_001289613Re-query CCDS DB by Protein ID:NP_001276542Link to BLAST:NP_001276542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276542.1 494 Q8CIN6-2 494 100% 0 0

Chromosomal Locations for CCDS 79972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94479107 94479251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94480268 94480350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94484817 94484865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94485273 94485401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94485497 94485576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94486524 94486667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94486794 94486935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94487135 94487284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94487703 94487852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94488139 94488279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94488527 94488670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94489471 94489598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGAAGGAGCCAGATGCCATCAAGCTGTTTGTGGGGCAGATCCCGAGGCATCTGGAGGAAAAGGACCTGA
AGCCCATCTTCGAGCAGTTTGGTCGGATCTTCGAGCTGACTGTCATCAAGGACAAGTACACCGGGCTGCA
CAAGGGATGTGCTTTCCTGACGTACTGTGCTCGCGATTCAGCCCTGAAGGCCCAGAGTGCCCTGCACGAA
CAGAAGACTCTCCCAGGGATGAACAGGCCGATCCAGGTCAAGCCAGCCGACAGCGAGAGTCGAGGAGAAG
ACCGGAAGCTCTTTGTGGGCATGCTAGGAAAGCAGCAGACAGATGAGGATGTCCGGAAGATGTTTGAACC
ATTTGGGACTATAGACGAGTGCACTGTGCTCCGGGGGCCAGACGGTACCAGCAAAGGCTGTGCCTTTGTG
AAGTTCCAGACTCACGCTGAGGCCCAGGCAGCCATCAACACCCTTCACAGCAGCCGGACCCTACCGGGTG
CCTCATCCAGCCTGGTGGTAAAGTTTGCTGACACGGAGAAGGAGCGAGGTCTCCGTCGAATGCAGCAGGT
GGCTACCCAGCTGGGCATGTTCAGCCCGATCGCCCTCCAGTTTGGAGCCTACAGCGCCTACACCCAGGCC
CTGATGCAGCAGCAGGCGGCCCTGGTAGCAGCTCACAGTGCCTACCTCAGCCCTATGGCCACCATGGCTG
CCGTGCAGATGCAGCACATGGCTGCCATCAGTGCCAATGGCCTCATCGCCACCCCCATCACTCCATCCTC
AGGAACCAGCACCCCTCCTGCCATTGCTGCCACGCCCGTCTCTGCCATCCCTGCTGCCTTGGGCGTCAAC
GGCTACAGCCCGGTGCCCACCCAGCCTACAGGGCAGCCTGCCCCGGATGCTCTGTATCCCAACGGGGTTC
ACCCTTACCCAGATGAGGCTCTGTCTGCTGAGAGAAGTGCTGGCGGGGTTCCCATAATGTCCCAGGCCCA
CTCATGGCTTGTGATGCTCTCTGCAGCCCAGAGCCCGGCAGCCCCCGTGGACCCTCTCCAGCAGGCCTAT
GCAGGAATGCAGCACTACACAGCAGCGTACCCCGCAGCCTACAGCCTGGTTGCACCTGCGTTCCCGCAGC
CTCCAGCCCTGGTTGCCCAGCAGCCCCCACCACCACCTCAGCAACAGCAGCAGCAGCAGCAGCAGCAACA
GCAACAGCAGCAGCAACGGGAAGGCCCTGATGGCTGCAACATCTTCATCTACCACCTGCCCCAGGAGTTC
ACAGACTCAGAGATCCTCCAGATGTTTGTCCCTTTTGGTCATGTCATCTCAGCCAAAGTCTTTGTTGACC
GGGCCACCAATCAGAGCAAATGTTTTGGCTTTGTGAGTTTCGACAATCCGGCCAGTGCCCAGGCTGCCAT
CCAGGCTATGAACGGTTTCCAGATTGGCATGAAGCGCCTCAAAGTCCAGCTAAAGCGGCCTAAGGATGCA
AACAGGCCCTACTAA

Translation (494 aa):
MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHE
QKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFV
KFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA
LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAISANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVN
GYSPVPTQPTGQPAPDALYPNGVHPYPDEALSAERSAGGVPIMSQAHSWLVMLSAAQSPAAPVDPLQQAY
AGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEF
TDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA
NRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH