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Report for CCDS79974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79974.1 Public Mus musculus 3 Celf3 23 108 98 CCDS HistoryNCBI Gene:78784Re-query CCDS DB by CCDS ID:79974.1Re-query CCDS DB by GeneID:78784See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198316.4 ENSMUSP00000142412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198316.4Link to Ensembl Protein Viewer:ENSMUSP00000142412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198316Re-query CCDS DB by Protein ID:ENSMUSP00000142412
Original member Current member NCBI NM_001289616.1 NP_001276545.1 Accepted alive Link to Nucleotide Sequence:NM_001289616.1Link to Protein Sequence:NP_001276545.1Re-query CCDS DB by Nucleotide ID:NM_001289616Re-query CCDS DB by Protein ID:NP_001276545Link to BLAST:NP_001276545.1

Chromosomal Locations for CCDS 79974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94484817 94484865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94485276 94485401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94485497 94485576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94486524 94486667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94486794 94486935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94487135 94487284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94487787 94487852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94488139 94488279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94488527 94488670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94489471 94489598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGAACAGGCCGATCCAGGTCAAGCCAGCCGACAGCGAGAGTCGAGGAGACCGGAAGCTCTTTGTGGGCA
TGCTAGGAAAGCAGCAGACAGATGAGGATGTCCGGAAGATGTTTGAACCATTTGGGACTATAGACGAGTG
CACTGTGCTCCGGGGGCCAGACGGTACCAGCAAAGGCTGTGCCTTTGTGAAGTTCCAGACTCACGCTGAG
GCCCAGGCAGCCATCAACACCCTTCACAGCAGCCGGACCCTACCGGGTGCCTCATCCAGCCTGGTGGTAA
AGTTTGCTGACACGGAGAAGGAGCGAGGTCTCCGTCGAATGCAGCAGGTGGCTACCCAGCTGGGCATGTT
CAGCCCGATCGCCCTCCAGTTTGGAGCCTACAGCGCCTACACCCAGGCCCTGATGCAGCAGCAGGCGGCC
CTGGTAGCAGCTCACAGTGCCTACCTCAGCCCTATGGCCACCATGGCTGCCGTGCAGATGCAGCACATGG
CTGCCATCAGTGCCAATGGCCTCATCGCCACCCCCATCACTCCATCCTCAGGAACCAGCACCCCTCCTGC
CATTGCTGCCACGCCCGTCTCTGCCATCCCTGCTGCCTTGGGCGTCAACGGCTACAGCCCGGTGCCCACC
CAGCCTACAGGGCAGCCTGCCCCGGATGCTCTGTATCCCAACGGGGTTCACCCTTACCCAGCCCAGAGCC
CGGCAGCCCCCGTGGACCCTCTCCAGCAGGCCTATGCAGGAATGCAGCACTACACAGCAGCGTACCCCGC
AGCCTACAGCCTGGTTGCACCTGCGTTCCCGCAGCCTCCAGCCCTGGTTGCCCAGCAGCCCCCACCACCA
CCTCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAACGGGAAGGCCCTGATGGCT
GCAACATCTTCATCTACCACCTGCCCCAGGAGTTCACAGACTCAGAGATCCTCCAGATGTTTGTCCCTTT
TGGTCATGTCATCTCAGCCAAAGTCTTTGTTGACCGGGCCACCAATCAGAGCAAATGTTTTGGCTTTGTG
AGTTTCGACAATCCGGCCAGTGCCCAGGCTGCCATCCAGGCTATGAACGGTTTCCAGATTGGCATGAAGC
GCCTCAAAGTCCAGCTAAAGCGGCCTAAGGATGCAAACAGGCCCTACTAA

Translation (389 aa):
MNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAE
AQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAA
LVAAHSAYLSPMATMAAVQMQHMAAISANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPT
QPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPP
PQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV
SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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