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Report for CCDS7998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7998.1 Public Homo sapiens 11 SLC15A3 24 110 108 CCDS HistoryNCBI Gene:51296Re-query CCDS DB by CCDS ID:7998.1Re-query CCDS DB by GeneID:51296See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000227880.8 ENSP00000227880.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000227880.8Link to Ensembl Protein Viewer:ENSP00000227880.2Re-query CCDS DB by Nucleotide ID:ENST00000227880Re-query CCDS DB by Protein ID:ENSP00000227880
Original member Current member NCBI NM_016582.3 NP_057666.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016582.3Link to Protein Sequence:NP_057666.1Re-query CCDS DB by Nucleotide ID:NM_016582Re-query CCDS DB by Protein ID:NP_057666Link to BLAST:NP_057666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057666.1 581 Q8IY34 581 100% 0 0

Chromosomal Locations for CCDS 7998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60937219 60937373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60937870 60938025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60939480 60939638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60941122 60941290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60942035 60942145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60943689 60943836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60946532 60946821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60950994 60951551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGCCCGCGCCGCGCGCCCGGGAGCAGCCCCGCGTGCCCGGGGAGCGCCAGCCGCTGCTGCCTCGCGGTG
CGCGGGGCCCTCGACGGTGGCGGCGGGCGGCGGGCGCGGCCGTGCTGCTGGTGGAGATGCTGGAGCGCGC
CGCCTTCTTCGGCGTCACCGCCAACCTCGTGCTGTACCTCAACAGCACCAACTTCAACTGGACCGGCGAG
CAGGCGACGCGCGCCGCGCTGGTATTCCTGGGCGCCTCCTACCTGCTGGCGCCCGTGGGCGGCTGGCTGG
CCGACGTGTACCTGGGCCGCTACCGCGCGGTCGCGCTCAGCCTGCTGCTCTACCTGGCCGCCTCGGGCCT
GCTGCCCGCCACCGCCTTCCCCGACGGCCGCAGCTCCTTCTGCGGAGAGATGCCCGCGTCGCCGCTGGGA
CCTGCCTGCCCCTCGGCCGGCTGCCCGCGCTCCTCGCCCAGCCCCTACTGCGCGCCCGTCCTCTACGCGG
GCCTGCTGCTACTCGGCCTGGCCGCCAGCTCCGTCCGGAGCAACCTCACCTCCTTCGGTGCCGACCAGGT
GATGGATCTCGGCCGCGACGCCACCCGCCGCTTCTTCAACTGGTTTTACTGGAGCATCAACCTGGGTGCT
GTGCTGTCGCTGCTGGTGGTGGCGTTTATTCAGCAGAACATCAGCTTCCTGCTGGGCTACAGCATCCCTG
TGGGCTGTGTGGGCCTGGCATTTTTCATCTTCCTCTTTGCCACCCCCGTCTTCATCACCAAGCCCCCGAT
GGGCAGCCAAGTGTCCTCTATGCTTAAGCTCGCTCTCCAAAACTGCTGCCCCCAGCTGTGGCAACGACAC
TCGGCCAGAGACCGTCAATGTGCCCGCGTGCTGGCCGACGAGAGGTCTCCCCAGCCAGGGGCTTCCCCGC
AAGAGGACATCGCCAACTTCCAGGTGCTGGTGAAGATCTTGCCCGTCATGGTGACCCTGGTGCCCTACTG
GATGGTCTACTTCCAGATGCAGTCCACCTATGTCCTGCAGGGTCTTCACCTCCACATCCCAAACATTTTC
CCAGCCAACCCGGCCAACATCTCTGTGGCCCTGAGAGCCCAGGGCAGCAGCTACACGATCCCGGAAGCCT
GGCTCCTCCTGGCCAATGTTGTGGTGGTGCTGATTCTGGTCCCTCTGAAGGACCGCTTGATCGACCCTTT
ACTGCTGCGGTGCAAGCTGCTTCCCTCTGCTCTGCAGAAGATGGCGCTGGGGATGTTCTTTGGTTTTACC
TCCGTCATTGTGGCAGGAGTCCTGGAGATGGAGCGCTTACACTACATCCACCACAACGAGACCGTGTCCC
AGCAGATTGGGGAGGTCCTGTACAACGCGGCACCACTGTCCATCTGGTGGCAGATCCCTCAGTACCTGCT
CATTGGGATCAGTGAGATCTTTGCCAGCATCCCAGGCCTGGAGTTTGCCTACTCAGAGGCCCCGCGCTCC
ATGCAGGGCGCCATCATGGGCATCTTCTTCTGCCTGTCGGGGGTGGGCTCACTGTTGGGCTCCAGCCTAG
TGGCACTGCTGTCCTTGCCCGGGGGCTGGCTGCACTGCCCCAAGGACTTTGGGAACATCAACAATTGCCG
GATGGACCTCTACTTCTTCCTGCTGGCTGGCATTCAGGCCGTCACGGCTCTCCTATTTGTCTGGATCGCT
GGACGCTATGAGAGGGCGTCCCAGGGCCCAGCCTCCCACAGCCGTTTCAGCAGGGACAGGGGCTGA

Translation (581 aa):
MPAPRAREQPRVPGERQPLLPRGARGPRRWRRAAGAAVLLVEMLERAAFFGVTANLVLYLNSTNFNWTGE
QATRAALVFLGASYLLAPVGGWLADVYLGRYRAVALSLLLYLAASGLLPATAFPDGRSSFCGEMPASPLG
PACPSAGCPRSSPSPYCAPVLYAGLLLLGLAASSVRSNLTSFGADQVMDLGRDATRRFFNWFYWSINLGA
VLSLLVVAFIQQNISFLLGYSIPVGCVGLAFFIFLFATPVFITKPPMGSQVSSMLKLALQNCCPQLWQRH
SARDRQCARVLADERSPQPGASPQEDIANFQVLVKILPVMVTLVPYWMVYFQMQSTYVLQGLHLHIPNIF
PANPANISVALRAQGSSYTIPEAWLLLANVVVVLILVPLKDRLIDPLLLRCKLLPSALQKMALGMFFGFT
SVIVAGVLEMERLHYIHHNETVSQQIGEVLYNAAPLSIWWQIPQYLLIGISEIFASIPGLEFAYSEAPRS
MQGAIMGIFFCLSGVGSLLGSSLVALLSLPGGWLHCPKDFGNINNCRMDLYFFLLAGIQAVTALLFVWIA
GRYERASQGPASHSRFSRDRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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