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Report for CCDS80040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80040.1 Public Mus musculus 3 Kyat3 23 108 98 CCDS HistoryNCBI Gene:229905Re-query CCDS DB by CCDS ID:80040.1Re-query CCDS DB by GeneID:229905See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106218.7 ENSMUSP00000101825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106218.7Link to Ensembl Protein Viewer:ENSMUSP00000101825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106218Re-query CCDS DB by Protein ID:ENSMUSP00000101825
Original member Current member NCBI NM_001293560.1 NP_001280489.1 Accepted alive Link to Nucleotide Sequence:NM_001293560.1Link to Protein Sequence:NP_001280489.1Re-query CCDS DB by Nucleotide ID:NM_001293560Re-query CCDS DB by Protein ID:NP_001280489Link to BLAST:NP_001280489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280489.1 455 Q71RI9-1 455 100% 0 0

Chromosomal Locations for CCDS 80040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142706690 142706791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142718376 142718434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142720361 142720505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142723115 142723264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142725421 142725507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142725964 142726089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142726182 142726302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142729759 142729835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142731202 142731291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142734474 142734660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142737772 142737845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142738225 142738311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142744071 142744133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGCTTTTGGCCCAGAGGAGACTCATCTCCCTTGGCTGCAGATCAAAGCCCATAAAGACAATTTACTCTT
CTTCGAAAGTCCTCGGACTCTGCACTTCTGCCAAAATGGCTTTGAAATTCAAAAACGCCAAACGAATCGA
AGGCCTGGACAGCAATGTGTGGGTTGAATTTACTAAGTTGGCTGCGGATCCTTCTGTGGTGAACCTTGGA
CAAGGCTTTCCAGATATATCCCCTCCTTCATACGTAAAAGAAGAGTTATCAAAGGCTGCATTTATTGATA
ACATGAATCAATACACAAGAGGCTTTGGTCATCCAGCACTTGTGAAAGCTCTGTCCTGCTTATATGGAAA
GATTTATCAACGTCAAATTGATCCAAACGAAGAAATCCTTGTGGCCGTGGGGGCATATGGATCTCTCTTT
AACTCCATCCAAGGATTGGTGGACCCAGGAGATGAAGTGATAATTATGGTGCCTTTTTACGACTGTTATG
AGCCCATGGTGAGAATGGCCGGAGCAGTGCCTGTGTTTATTCCCCTGAGATCTAAACCTACTGACGGGAT
GAAGTGGACTAGCTCTGACTGGACATTCGATCCTCGAGAACTGGAAAGTAAATTCAGTTCCAAAACGAAA
GCCATAATATTAAATACTCCACACAACCCCCTCGGCAAGGTGTATACCAGACAGGAGCTGCAAGTCATTG
CTGACCTTTGCGTCAAGCACGACACTCTGTGCATCAGCGATGAGGTTTATGAATGGCTTGTCTATACTGG
ACATACGCACGTAAAAATAGCCACTCTTCCAGGTATGTGGGAGAGAACAATAACAATAGGAAGTGCTGGC
AAGACATTCAGTGTGACTGGCTGGAAGCTCGGCTGGAGCATTGGCCCTGCTCACCTGATAAAGCATTTAC
AGACCGTTCAACAGAACAGTTTTTACACGTGTGCGACTCCTTTACAGGCAGCCTTGGCCGAGGCGTTTTG
GATCGATATCAAGCGCATGGATGACCCTGAGTGTTACTTTAATTCTCTGCCAAAGGAATTAGAAGTAAAG
AGAGATCGGATGGTCCGTTTACTTAACAGCGTTGGCCTGAAACCCATTGTTCCTGACGGGGGTTACTTCA
TCATTGCTGATGTGTCTTCATTAGGTGCTGACCTCTCGGACATGAACAGCGATGAGCCTTATGACTATAA
GTTTGTGAAGTGGATGACGAAACATAAGAAACTGACAGCCATTCCTGTTTCTGCCTTCTGCGACTCCAAG
TCTAAACCACACTTTGAGAAGCTGGTGCGGTTTTGCTTTATTAAAAAAGACAGCACACTGGATGCTGCCG
AAGAAATCTTCAGGGCCTGGAACAGCCAGAAGTCTTGA

Translation (455 aa):
MLLAQRRLISLGCRSKPIKTIYSSSKVLGLCTSAKMALKFKNAKRIEGLDSNVWVEFTKLAADPSVVNLG
QGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF
NSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTK
AIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAG
KTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVK
RDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSK
SKPHFEKLVRFCFIKKDSTLDAAEEIFRAWNSQKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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