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Report for CCDS80146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80146.1 Public Mus musculus 4 Cyp4a29 23 108 98 CCDS HistoryNCBI Gene:230639Re-query CCDS DB by CCDS ID:80146.1Re-query CCDS DB by GeneID:230639See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118278.1 ENSMUSP00000139717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118278.1Link to Ensembl Protein Viewer:ENSMUSP00000139717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118278Re-query CCDS DB by Protein ID:ENSMUSP00000139717
Original member Current member NCBI NM_001100183.2 NP_001093653.1 Accepted alive Link to Nucleotide Sequence:NM_001100183.2Link to Protein Sequence:NP_001093653.1Re-query CCDS DB by Nucleotide ID:NM_001100183Re-query CCDS DB by Protein ID:NP_001093653Link to BLAST:NP_001093653.1

Chromosomal Locations for CCDS 80146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115242084 115242278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115246932 115247073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115247634 115247675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115248482 115248609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115249655 115249779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115250103 115250257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115250686 115250792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115250877 115251067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115251166 115251299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115252642 115252706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115252847 115252923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115254389 115254557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGAGTATCTCTGCACTGAGCCCCATCAGATTTCTGGAATGTGTCTCTGGATTCCTCCAAGTGATCTTCC
TGATTGGCCTGCTTCTGCTGCTTTTCAAGGCAGCACAACACTATCTGCGCAGACAATGGCTGCTCAGAGC
CCTCTACCAGTTCCCATCACCACCCTCCCACTGGCTCTTTGGGCATTGCTTGCAGTTCAAAGTGGATGAG
GAGCTGAGATGGATTCTAAGATATTTAGAGAAATTCCCAGGTGCATTTCTCCACTGGATATGGGGAAGTC
ATGTCTTCATCAAGGTCTGCGACCCTGACTACATGAAAGTGATTCTGGGGAGAGCAGACCCAAAGGCTAG
CCTCTACCGATTCTTGACCCCTTGGCTTGGACATGGTTTGTTCTTTTTGAATGGAGATGAGTGGTTCCAG
CATCGTCGGTTGTTGACACCAGCATTCCACTATGACATCCTCAAACCCTATGTGGGGATCATGGCAGACT
CTGTACAAGTGATGCTGGAAAAATGGGAGCAGATTGCTTGTCAAGACATCACTCTAGAGATCTTTCACCC
TATCTCCTTGATGATGTTGGACACCATCATGAAGTATGCCTTCAGTTACCAGGGCAGTGTCCAATTGGAC
AGGAGTTCTCAGGCCTACCTCCAGGCTGTTAGTGATTTGAACAACCTAGTGACTTCCCGTATGAAGAATG
TCTTCCTCCACAATGACATTATCTACAACCTGACTTCCCATAGCCGAAGGACCAACTCTGCCTGCCAGAT
TGCCCATGAACACACAGACCGAGTTGTCAAGCTAAGGAAGGCTCAGCTACAGGACAACAAATCAATGAAG
AAGCTCAGAGGAAAGAGATGTTTGGATTTCCTGGACATCCTTCTATTATCCAGAATGGATGATGGGAGCA
GCTTGTCTGACAAAGCATTGCGTGCTGAGGTAGACTCACTCATGTTTGGGGGTCATGACACACCAGCCAG
TGGGATCTCCTGGGTCTTCTATGCTTTGGCTACACATCCCGACCACCAGCAGAGATGCAGAGAAGAGGTC
CAGAGCCTTCTTGGGGATGGATCCCCCATCACATGGGACCACCTGCACCAGATGCCCTATACCACCATGT
GCATCAAGGAGGCCCTGAGGCTCTACCCACCAATACCATCTGTTGGCAGAAAGCTTAGCACACCTGTCAC
CTTCCCTGATGGACGTTCCTTACCTAAAGGTATCACAGTTCTGCTCCACTTTTATGCTCTTCACCACAAC
CCAAAAGTGTGGCCAAATCCAGAGGTGTTTGATCCTTCTCGGTTTGCAATGAATTCTGTCCAACACAGCC
ATGCTTTCCTGCCGTTCTCAGGAGGATCAAGGAACTGCATTGGGAAGCACCTTGCCATGAATGTACTTAA
GGTCGCTGTGGCCCTAACCCTGCTTCGATTTGAGCTGCTGCCAGATCCCTCCAGGGTCCCCATCCCTACT
CAACAACTCGTATTAAAGTCTAAGAATGGGATCTACCTGCATCTCAGGAAGCTCCAATAG

Translation (509 aa):
MSISALSPIRFLECVSGFLQVIFLIGLLLLLFKAAQHYLRRQWLLRALYQFPSPPSHWLFGHCLQFKVDE
ELRWILRYLEKFPGAFLHWIWGSHVFIKVCDPDYMKVILGRADPKASLYRFLTPWLGHGLFFLNGDEWFQ
HRRLLTPAFHYDILKPYVGIMADSVQVMLEKWEQIACQDITLEIFHPISLMMLDTIMKYAFSYQGSVQLD
RSSQAYLQAVSDLNNLVTSRMKNVFLHNDIIYNLTSHSRRTNSACQIAHEHTDRVVKLRKAQLQDNKSMK
KLRGKRCLDFLDILLLSRMDDGSSLSDKALRAEVDSLMFGGHDTPASGISWVFYALATHPDHQQRCREEV
QSLLGDGSPITWDHLHQMPYTTMCIKEALRLYPPIPSVGRKLSTPVTFPDGRSLPKGITVLLHFYALHHN
PKVWPNPEVFDPSRFAMNSVQHSHAFLPFSGGSRNCIGKHLAMNVLKVAVALTLLRFELLPDPSRVPIPT
QQLVLKSKNGIYLHLRKLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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