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Report for CCDS80224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80224.1 Public Mus musculus 5 Kcnh2 23 108 98 CCDS HistoryNCBI Gene:16511Re-query CCDS DB by CCDS ID:80224.1Re-query CCDS DB by GeneID:16511See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115098.6 ENSMUSP00000110750.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115098.6Link to Ensembl Protein Viewer:ENSMUSP00000110750.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115098Re-query CCDS DB by Protein ID:ENSMUSP00000110750
Original member Current member NCBI NM_001294162.1 NP_001281091.1 Accepted alive Link to Nucleotide Sequence:NM_001294162.1Link to Protein Sequence:NP_001281091.1Re-query CCDS DB by Nucleotide ID:NM_001294162Re-query CCDS DB by Protein ID:NP_001281091Link to BLAST:NP_001281091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281091.1 820 O35219-3 820 99.8781% 0 1

Chromosomal Locations for CCDS 80224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24320000 24320149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24321245 24321422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24321636 24321822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24321946 24322221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24322655 24322754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24323071 24323264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24324333 24324585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24324956 24325155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24325494 24325881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24326349 24326777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24329165 24329272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGGCGATTCCAGCCGGGAAGGAGAGCAGGACAGGGGCTCTGCAGCCCAGGGCCCAGAAAGGCCGGGTGA
GGCGGGCAGTGCGCATCTCCAGCCTGGTGGCCCAGGAGGTCCTGTCCTTGGGAGCAGATGTGCTGCCTGA
GTATAAGCTGCAGGCCCCAAGAATCCACCGCTGGACCATCCTCCACTACAGCCCCTTCAAGGCGGTGTGG
GACTGGCTCATCCTGCTGCTGGTCATCTACACGGCAGTCTTCACACCGTACTCGGCCGCCTTCCTGCTGA
AGGAGACTGAAGATGGGTCCCAAGCCCCTGACTGTGGCTACGCCTGCCAGCCCCTGGCTGTAGTGGACCT
CATCGTGGACATCATGTTCATTGTGGACATCCTTATCAATTTCCGTACCACCTATGTTAATGCCAACGAG
GAGGTGGTTAGCCATCCTGGCCGCATTGCTGTGCACTACTTCAAGGGCTGGTTTCTCATTGACATGGTGG
CTGCCATCCCCTTCGACCTGCTCATCTTTGGCTCTGGCTCCGAGGAGCTGATCGGGCTGCTGAAAACTGC
GAGGCTGCTGCGGCTGGTGCGCGTGGCTCGGAAGCTGGACCGCTACTCGGAGTACGGGGCAGCAGTGCTC
TTCCTGCTCATGTGCACCTTCGCCCTCATTGCGCACTGGTTGGCCTGCATCTGGTACGCGATCGGCAACA
TGGAACAGCCTCACATGGACTCACACATCGGCTGGCTGCACAACTTGGGCGACCAGATCGGCAAGCCCTA
CAACAGCAGCGGCCTGGGAGGCCCCTCCATCAAGGACAAGTATGTCACAGCGCTCTACTTCACCTTCAGC
AGCCTCACCAGCGTGGGCTTTGGCAATGTCTCTCCCAACACCAACTCAGAGAAGATCTTCTCCATCTGTG
TCATGCTCATTGGCTCCCTCATGTATGCCAGCATCTTCGGCAACGTGTCCGCCATCATCCAGCGGCTGTA
CTCGGGCACGGCCCGCTACCACACACAGATGCTCCGGGTGCGGGAGTTTATCCGCTTTCACCAGATTCCC
AACCCATTACGCCAGCGCCTCGAGGAGTACTTCCAGCATGCTTGGTCCTACACCAATGGCATCGACATGA
ACGCGGTGCTGAAGGGCTTCCCTGAGTGCCTCCAGGCTGACATCTGCCTACACCTGAACCGCTCGCTGCT
GCAGCATTGCAAGCCATTCCGAGGGGCCACTAAAGGCTGCCTGAGGGCGCTGGCTATGAAGTTCAAGACC
ACACATGCACCACCAGGGGACACACTAGTGCACGCCGGGGACCTGCTTACTGCCCTCTACTTCATCTCCA
GGGGCTCCATCGAGATCCTGCGGGGTGATGTCGTGGTGGCCATCTTGGGGAAGAACGACATCTTTGGAGA
GCCTCTGAACCTATATGCCCGTCCTGGAAAGTCCAATGGGGATGTGCGGGCCCTCACGTACTGTGACCTG
CACAAGATCCATCGTGATGACTTGCTGGAGGTGTTGGACATGTATCCCGAGTTCTCAGATCACTTTTGGT
CTAGCCTGGAGATCACCTTCAACCTTCGAGATACCAACATGATTCCTGGCTCCCCAGGCAGTGCAGAACT
AGAGAGCGGCTTTAACAGGCAACGCAAGCGCAAACTGTCATTCCGCAGGCGTACAGACAAGGACACAGAG
CAGCCAGGGGAGGTGTCAGCCCTGGGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGAC
AGCCGGGAGGGCCATGGGGGGAGAGCCCATCCAGCGGCCCTTCCAGCCCAGAGAGCAGTGAAGATGAGGG
CCCTGGTCGCAGCTCCAGTCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCGGGAGACCCCCCA
GGTGGGGAGCCTTTGACAGAGGATGGGGAGAAAAGTGACACCTGTAATCCCTTGTCAGGTGCCTTCTCTG
GGGTGTCCAATATTTTCAGCTTCTGGGGGGACAGTCGGGGGCGCCAGTACCAGGAGTTGCCTCGATGCCC
TGCCCCTGCCCCCAGCCTCCTCAACATCCCCTTGTCTAGCCCTGGTCGGCGATCCCGGGGTGATGTGGAG
AGCAGGCTGGACGCACTCCAGAGACAGCTGAACAGGCTGGAAACCCGGCTAAGTGCAGACATGGCCACTG
TCCTACAGCTGCTACAGAGGCAAATGACCCTGGTCCCTCCTGCCTACAGTGCTGTGACCACCCCTGGGCC
CGGCCCCACTTCCGCATCCCCTTTGTTGCCTGTCGGCCCTGTCCCCACTCTCACCCTGGACTCGCTTTCT
CAGGTTTCCCAGTTCGTGGCGTTTGAGGAGCTTCCTGCAGGAGCCCCAGAGCTCCCCCAAGATGGCCCCA
CTCGACGCCTCTCCCTGCCCGGCCAGCTGGGGGCCCTTACCTCCCAGCCCCTGCACAGACATGGCTCAGA
TCCAGGCAGTTAG

Translation (820 aa):
MAIPAGKESRTGALQPRAQKGRVRRAVRISSLVAQEVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVW
DWLILLLVIYTAVFTPYSAAFLLKETEDGSQAPDCGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANE
EVVSHPGRIAVHYFKGWFLIDMVAAIPFDLLIFGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVL
FLLMCTFALIAHWLACIWYAIGNMEQPHMDSHIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFS
SLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIP
NPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKT
THAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDL
HKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMIPGSPGSAELESGFNRQRKRKLSFRRRTDKDTE
QPGEVSALGQGPARVGPGPSCRGQPGGPWGESPSSGPSSPESSEDEGPGRSSSPLRLVPFSSPRPPGDPP
GGEPLTEDGEKSDTCNPLSGAFSGVSNIFSFWGDSRGRQYQELPRCPAPAPSLLNIPLSSPGRRSRGDVE
SRLDALQRQLNRLETRLSADMATVLQLLQRQMTLVPPAYSAVTTPGPGPTSASPLLPVGPVPTLTLDSLS
QVSQFVAFEELPAGAPELPQDGPTRRLSLPGQLGALTSQPLHRHGSDPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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