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Report for CCDS80443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80443.1 Public Mus musculus 5 Agfg2 23 108 98 CCDS HistoryNCBI Gene:231801Re-query CCDS DB by CCDS ID:80443.1Re-query CCDS DB by GeneID:231801See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100544.10 ENSMUSP00000098112.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100544.10Link to Ensembl Protein Viewer:ENSMUSP00000098112.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100544Re-query CCDS DB by Protein ID:ENSMUSP00000098112
Original member Current member NCBI NM_001303266.1 NP_001290195.1 Accepted alive Link to Nucleotide Sequence:NM_001303266.1Link to Protein Sequence:NP_001290195.1Re-query CCDS DB by Nucleotide ID:NM_001303266Re-query CCDS DB by Protein ID:NP_001290195Link to BLAST:NP_001290195.1

Chromosomal Locations for CCDS 80443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137651769 137651822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137652430 137652515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137653763 137653891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137655139 137655219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137655330 137655412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137655608 137655728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137660162 137660194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137661364 137661492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137663436 137663604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137664216 137664372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137667061 137667176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137667681 137667774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137684359 137684579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGTGATGGCGGCTAAGAAGGGCCCGGGCCCGGGTGGCGGGGTCGGAGGGAGCAAAGCGGAGGCTGAAG
CCGCTTCGGAGGTGTGGTGCCGCCGAGTGCGGGAGCTGGGCGGCTGCAGCCAGGCCGGGAACCGCCACTG
TTTCGAGTGCGCCCAGCGCGGGGTCACGTATGTGGACATCACCGTGGGCAGCTTCGTCTGCACCACCTGC
TCCGGCCTCCTGAGAGGCCTGAACCCCCCTCATCGAGTCAAGTCAATCTCCATGACAACTTTCACTGAGC
CTGAAGTCCTGTTCCTCCAATCTCGTGGAAATGAGGTCTGTCGGAAAATCTGGCTCGGTCTTTTTGATGC
TCGGACATCGTTGATACCAGATTCCAGGGATCCTCAGAAGGTGAAGGAGTTTCTCCAAGAAAAATATGAG
AAAAAAAGATGGTACGTCCCCCCAGAGCAAGTCAAGGGGCCCTCTTACAGCAAAGGCAGTGTCTCTGCTA
CCCCTGTCCAGGGCTCTGTCCCAGAAGGGAAACCCATTCGGACACTTCTGGGAGACCCTGTGCCATCTCT
CTCTGATCCTGCTTCCACTTCAAGCCAGCCTGGGAGCCAGTCGCAGGCACGCAGCAGCTCGCAGGCCAGG
AGCTCCCAGCCTCCTTCCCATTCATCCACCAAGAAAGCCAGCACTGACCTGCTGGCGGATATCGGGGGAG
ACCCCTTTGCTGCTCCCCAGGTGGTGCCAGCCTTTGCCTCATTCCCAGGCTTTGGAGTAGGCCAGACTCC
TGCCCATGGAGGCTTTGCCAACTTCGATGCCTTCAGCAGCAGCCCTAGCTCTTCCACCTTCGGAAGCCTC
CCTCCATCCGTCCAAGCGCCATTCCAGGCCCAGCCGACCCCTGCAGCCAATCGGATGCTAACTGGAAGTT
ACAGCTTTGGAAGTGGCCAGATGTCTGCGTTTGGTGTGGCACCCCTTGCAGCTGCCAGTCAACCCAACAA
CCTTGCAGATGTGGGCGGCCTCCTGGGTCCCAGGATGGCTGCTGGAGGTCTCCCTGGCAGTGTTTTTGGG
ATGCCGAGCCAGGTTCCTGCCCTGCAGTCGGCCGTGCCAGGTGTTAGCGGCAGTGGAGGGCTCCCCTTTG
GAGCCTACACCAACCCCTTCGCCACCCCTGCCCAAGCCCAGCTGCCTTCTACCAACCCATTCCAACCCAA
TGGTCTAGCCTCAGGGCCTGGCTTTGGGATGAGCAGTGTTCGGCCTGGCCTTCTCCAGCCAGTGCCACCC
TCCGGGGCCTTTGCCAGTCCCTTCTCTGCACCCGTGTTCCCCACACAGGCTGGACTGGCCGACCAGCAGA
ATGGATCTTCCTTTGGCGACTTGGGGACCTCTAAGCTGGGGCAGAGGCCACTGAGCCAGCCGGCTGGGAT
CTCTACCAATCCTTTCATGACTGGATCCTCAGCGTTTGCCTCCAAACCTCCAACCACAAACCCATTCTTG
TAG

Translation (490 aa):
MVMAAKKGPGPGGGVGGSKAEAEAASEVWCRRVRELGGCSQAGNRHCFECAQRGVTYVDITVGSFVCTTC
SGLLRGLNPPHRVKSISMTTFTEPEVLFLQSRGNEVCRKIWLGLFDARTSLIPDSRDPQKVKEFLQEKYE
KKRWYVPPEQVKGPSYSKGSVSATPVQGSVPEGKPIRTLLGDPVPSLSDPASTSSQPGSQSQARSSSQAR
SSQPPSHSSTKKASTDLLADIGGDPFAAPQVVPAFASFPGFGVGQTPAHGGFANFDAFSSSPSSSTFGSL
PPSVQAPFQAQPTPAANRMLTGSYSFGSGQMSAFGVAPLAAASQPNNLADVGGLLGPRMAAGGLPGSVFG
MPSQVPALQSAVPGVSGSGGLPFGAYTNPFATPAQAQLPSTNPFQPNGLASGPGFGMSSVRPGLLQPVPP
SGAFASPFSAPVFPTQAGLADQQNGSSFGDLGTSKLGQRPLSQPAGISTNPFMTGSSAFASKPPTTNPFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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