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Report for CCDS80515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80515.1 Public Mus musculus 6 Agbl3 23 108 98 CCDS HistoryNCBI Gene:76223Re-query CCDS DB by CCDS ID:80515.1Re-query CCDS DB by GeneID:76223See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115016.7 ENSMUSP00000110668.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115016.7Link to Ensembl Protein Viewer:ENSMUSP00000110668.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115016Re-query CCDS DB by Protein ID:ENSMUSP00000110668
Original member Current member NCBI NM_001289656.1 NP_001276585.1 Accepted alive Link to Nucleotide Sequence:NM_001289656.1Link to Protein Sequence:NP_001276585.1Re-query CCDS DB by Nucleotide ID:NM_001289656Re-query CCDS DB by Protein ID:NP_001276585Link to BLAST:NP_001276585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276585.1 1006 Q8CDP0-1 1006 100% 0 0

Chromosomal Locations for CCDS 80515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34782156 34782218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34783570 34783630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34785191 34785376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34793882 34793989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34794286 34794300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34798194 34798332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34799133 34799909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34803443 34803611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34812832 34812958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34814384 34814484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34814711 34814823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34823018 34823084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34824720 34824800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34828192 34828249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34832505 34832576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34836813 34836858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34839325 34839509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34846755 34846983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34857480 34857903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3021 nt):
ATGTCAGAAGATTCAGAGGAGGAAGACTACTCAGATAGAAGCATCAGTGATGACGATGACTTGGATGAGG
ATTCCTTCATGAAATTTGTAAGTGATGATATTCATCCGTGCACACTACTGGCAGCTGATTCTATTGGTGA
CCCATTCTTCCCTCGGACTACACAAATTTTATTGGAGTATCAGCTAGGAAGATGGGTACCACGCCTTCGC
GGACCACGAGATTTATATGGTGTCTCTTCTTCTGGTCCACTGAGCCCAACACGGTGGCCATACCACTGTG
AGGTCATTGATGAAAAAGTCCAGCATATTGAATGGACTCCCTTTGTCCCTGAGCCAGTGTATGTCCCGAC
AGGCCTGGAAATAGAGCCTGTTTACCCAAACTCCAAGGAAGATACTGTGGTTTATTTAGCTGAAGATGAT
CACCTTTGTAAAGCTTACAAAGAGCCCTGTTTTGTGTATTCCCGAGTTGGGGGTAACCGAACATCCTTGA
AACAACCTGTGGATAACTGTGACAACACGCTGGTGTTTGAAGCAAGGTTTGAGAGTGGTAATCTACAGAA
GGTAGTCAAAGTTGCAGATCATGAATACGAGTTGACTGTGCGCCCAGACCTCTTCACAAATAAGCACACT
CAGTGGTACTATTTCCAGGTCACTAATACCCAAGCAGAAATAGTCTACAGATTCACTATTGTCAACTTTA
CCAAGCCTGCTAGTCTTTACAATCGGGGTATGAAGCCATTGTTCTATTCTGAAAAAGAGGCCAAAACCCA
TAACATTGGCTGGCAGAGAATAGGAGATCAAATCAAGTATTATAAAAATAACCTTGGGCAAGATGGGCGC
CATTTTTTTTCTCTTACGTGGACATTTCAGTTTCCACACAGCCAGGATACGTGCTACTTTGCTCACTGCT
ATCCATACACTTACTCCAACCTTCAAGAATACCTGTCTGGCATCAACAGTGACCCAGTAAGATCAAAGTT
TTGTAAAATACGTGTCTTGTGTCACACACTTGCCAGGAATATGGTGTATGTCTTGACAATAACTACTCCC
TTGAAGACTAGTGACTCAAAGCGCAAGGCTGTGATTTTGACTGCAAGGGTCCATCCAGGAGAGACCAACA
GCTCTTGGATCATGAAAGGCTTCCTGGATTATATTTTAGGAGACTCAAGTGATGCACGCTTGCTTCGGGA
CACTTTCATCTTCAAGGTGGTACCCATGCTGAATCCAGATGGCGTGATTGTGGGAAATTATCGATGTTCC
TTAGCTGGACGGGATTTAAACCGTAATTACACATCGCTCCTGAAGGAGTCTTTCCCTTCTGTTTGGTATA
CAAGGAACATGATCAATAGGTTAATGGAGAAACGAGAGGTTATTTTATATTGTGATCTTCATGGCCATAG
TAGGAAACAGAATATTTTCATGTATGGTTGTGATGGTAGCAGCAGATCTAAAACAAAAGGATTATACTTA
CAGCAACGGATCTTTCCACTCATGCTGAGCAAAAATTGCCCAAATATATTTTCCTTCTCAGCTTGCAAGT
TTAACGTTCAGAAAAGCAAAGAGGGGACAGGAAGGGTTGTAATGTGGAAGATGGGCATCAGGAACAGCTT
CACGCTGGAGGCCACCTTCTGCGGATCTACTCTGGGCAATAAACGAGGCACTCATTTCGGCACAAAAGAT
TTAGAGTCGATGGGATATCATTTTTGTGATTCTCTGTTGGACTACTGTGATCCTGACAGGAGCAAATATT
ATCAGTGCTTGAAAGAATTAGAAGAAATGGAGAAACATTTGAGCTCCGAAAGAGTCTCTGATAACACAGA
TACTTCTCTAGTAGAAATTTCTTTGGATGTAGAGTCTAGTAGTCGAGGCTCTGACAGCTCAGAGTCCAAT
GACACTCAGACTTACCTTCTCAAGGTGACCTCTCAGGCAAGAAACAAGAAAAAGTATCTGAAAACAAAGA
GGGAAAGAAATGCCATCCTAGCAAACTGCCAGAATAACATGCAAGAGGTTTATGGCAAAGAACATTTACT
CCAAAGACACGATGAATCAAATTCTGATGGGAATGATCCAAGGATAGATGCACCAGATGTTTATGTGGCT
CACTGTTTCAGAAGACCGTTGCCTAACCAAGGCGTGGTGAAAATTCCTGGACAAAGGTTTTATCCCGGAA
AAACATGGTCCAGCTCCCAGCGTATGATTAAGAGTCTTAACAAAGACCATAGGACATGTATTTTAGAAAC
TTGTAAGAATCCAATCCAGGAAGTTCAGTCCAGAGGAATCAATATACATGAAAGTTGTTTCAAAATGGCG
AAATGTCCTATGAACAAAAGACCTTCACATTGGATTGAGAAGACAAGAATACCAACAGAGTCACATCACC
AGTTGAAAAGCAAAGCAAAAAGATGCTCGTCTTTCCAAAGCAAGAGGACTGGGACGAATTGGACAGATGA
TGAGAAACGAATTTACAGGGATAAAAGAATAGCTCAAACTCAGGAAATATTAAAGTATTTACTCCCTATC
GTGGAGTCCTCTCAAAACAGGAAATCTACTCAAATGAACAATCTAATCAACCCGATAGCCAACTTGCAAC
AGCATCAACTTATTCCAACTGCTTGCATAAATAGAAGAAGATACAGCATACCTTGGACACCAACCAGAAA
TCTCCCTTTTAAAGCCCAAAGGAATCTTATGACAGACACCTCCGAATGGCTCCAGTCTGTGCCCCTTGGG
TCATTTGAAAGTTTGTTACCTCTCTGCAATCTTCAGAAGAAGACAAAACATTTTGAACTCTGGGGCAAAA
AGGCTAAGGATGTGCAGCTTGCCACCAGCCAATGGGAGGCTGTGCCCTTGAGTTCTAACATGGATGCAAG
TATCATCAGGGGTAACAGTGTTCTGCAGCCTAAAGAATTCACCATGAGGAGCTCTAAGCAGAGAATTCCT
TACCTAACCAAAACCAGCAAGAAACCCAGTGAGAGTGATGGCCTGCTCACCTTCCAGCTGAAGATTCACA
GGAACAGTTAA

Translation (1006 aa):
MSEDSEEEDYSDRSISDDDDLDEDSFMKFVSDDIHPCTLLAADSIGDPFFPRTTQILLEYQLGRWVPRLR
GPRDLYGVSSSGPLSPTRWPYHCEVIDEKVQHIEWTPFVPEPVYVPTGLEIEPVYPNSKEDTVVYLAEDD
HLCKAYKEPCFVYSRVGGNRTSLKQPVDNCDNTLVFEARFESGNLQKVVKVADHEYELTVRPDLFTNKHT
QWYYFQVTNTQAEIVYRFTIVNFTKPASLYNRGMKPLFYSEKEAKTHNIGWQRIGDQIKYYKNNLGQDGR
HFFSLTWTFQFPHSQDTCYFAHCYPYTYSNLQEYLSGINSDPVRSKFCKIRVLCHTLARNMVYVLTITTP
LKTSDSKRKAVILTARVHPGETNSSWIMKGFLDYILGDSSDARLLRDTFIFKVVPMLNPDGVIVGNYRCS
LAGRDLNRNYTSLLKESFPSVWYTRNMINRLMEKREVILYCDLHGHSRKQNIFMYGCDGSSRSKTKGLYL
QQRIFPLMLSKNCPNIFSFSACKFNVQKSKEGTGRVVMWKMGIRNSFTLEATFCGSTLGNKRGTHFGTKD
LESMGYHFCDSLLDYCDPDRSKYYQCLKELEEMEKHLSSERVSDNTDTSLVEISLDVESSSRGSDSSESN
DTQTYLLKVTSQARNKKKYLKTKRERNAILANCQNNMQEVYGKEHLLQRHDESNSDGNDPRIDAPDVYVA
HCFRRPLPNQGVVKIPGQRFYPGKTWSSSQRMIKSLNKDHRTCILETCKNPIQEVQSRGINIHESCFKMA
KCPMNKRPSHWIEKTRIPTESHHQLKSKAKRCSSFQSKRTGTNWTDDEKRIYRDKRIAQTQEILKYLLPI
VESSQNRKSTQMNNLINPIANLQQHQLIPTACINRRRYSIPWTPTRNLPFKAQRNLMTDTSEWLQSVPLG
SFESLLPLCNLQKKTKHFELWGKKAKDVQLATSQWEAVPLSSNMDASIIRGNSVLQPKEFTMRSSKQRIP
YLTKTSKKPSESDGLLTFQLKIHRNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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