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Report for CCDS80516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80516.1 Public Mus musculus 6 Agbl3 23 108 98 CCDS HistoryNCBI Gene:76223Re-query CCDS DB by CCDS ID:80516.1Re-query CCDS DB by GeneID:76223See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115014.7 ENSMUSP00000110666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115014.7Link to Ensembl Protein Viewer:ENSMUSP00000110666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115014Re-query CCDS DB by Protein ID:ENSMUSP00000110666
Original member Current member NCBI NM_001289658.1 NP_001276587.1 Accepted alive Link to Nucleotide Sequence:NM_001289658.1Link to Protein Sequence:NP_001276587.1Re-query CCDS DB by Nucleotide ID:NM_001289658Re-query CCDS DB by Protein ID:NP_001276587Link to BLAST:NP_001276587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276587.1 129 Q8CDP0-5 129 100% 0 0

Chromosomal Locations for CCDS 80516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34782156 34782218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34783570 34783630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34785191 34785456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGTCAGAAGATTCAGAGGAGGAAGACTACTCAGATAGAAGCATCAGTGATGACGATGACTTGGATGAGG
AT
TCCTTCATGAAATTTGTAAGTGATGATATTCATCCGTGCACACTACTGGCAGCTGATTCTATTGGTGA
C
CCATTCTTCCCTCGGACTACACAAATTTTATTGGAGTATCAGCTAGGAAGATGGGTACCACGCCTTCGC
GGA
CCACGAGATTTATATGGTGTCTCTTCTTCTGGTCCACTGAGCCCAACACGGTGGCCATACCACTGTG
AG
GTCATTGATGAAAAAGTCCAGCATATTGGTATGTTTTTAGAAGTTTTGGGGATTCAGACATTAGCAAA
C
TTATCAATCTTGATGTTAATGAGGACACTAATGATGTAA


Translation (129 aa):
MSEDSEEEDYSDRSISDDDDLDEDSFMKFVSDDIHPCTLLAADSIGDPFFPRTTQILLEYQLGRWVPRLR
G
PRDLYGVSSSGPLSPTRWPYHCEVIDEKVQHIGMFLEVLGIQTLANLSILMLMRTLMM




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser