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Report for CCDS80536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80536.1 Public Mus musculus 6 Chn2 23 108 98 CCDS HistoryNCBI Gene:69993Re-query CCDS DB by CCDS ID:80536.1Re-query CCDS DB by GeneID:69993See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114401.7 ENSMUSP00000110043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114401.7Link to Ensembl Protein Viewer:ENSMUSP00000110043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114401Re-query CCDS DB by Protein ID:ENSMUSP00000110043
Original member Current member NCBI NM_001311134.1 NP_001298063.1 Accepted alive Link to Nucleotide Sequence:NM_001311134.1Link to Protein Sequence:NP_001298063.1Re-query CCDS DB by Nucleotide ID:NM_001311134Re-query CCDS DB by Protein ID:NP_001298063Link to BLAST:NP_001298063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298063.1 277 Q80XD1-3 277 100% 0 0

Chromosomal Locations for CCDS 80536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54269444 54269446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54273076 54273153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54286094 54286178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54290267 54290440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54293038 54293115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54295784 54295921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54298045 54298150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54300073 54300244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAACGACAACCACTTCAACTATGAGAAGACAC
ACAACTTCAAGGTGCACACATTCCGGGGCCCACACTGGTGTGAATACTGTGCCAATTTTATGTGGGGGCT
CATCGCCCAGGGAGTCCGGTGTTCAGATTGTGGGTTAAACGTACACAAACAGTGCTCCAAGCACGTCCCC
AATGACTGCCAGCCAGATCTCAAGAGGATCAAGAAAGTGTACTGCTGTGACCTCACCACGCTTGTCAAAG
CTCACAACACTCAGAGACCCATGGTGGTGGACATATGTATTCGGGAAATTGAAGCAAGAGGATTAAAGTC
AGAAGGGCTTTACAGAGTCTCTGGATTCACAGAACACATTGAAGATGTCAAGATGGCGTTTGACAGAGAT
GGTGAAAAGGCGGATATCTCTGCCAACATCTACCCAGACATAAACATCATCACTGGAGCCCTGAAACTGT
ACTTCCGAGACTTACCCATCCCTATCATCACATATGACACCTACTCCAAATTTATAGAGGCAGCAAAAAT
CTCCAATGCGGATGAGAGGCTGGAAGCTGTCCATGAGGTCCTGATGCTGCTGCCTCCTGCCCACTATGAG
ACCCTGCGCTACCTGATGATCCACCTGAAAAAGGTTACCATGAATGAAAAGGACAATTTAATGAATGCCG
AAAATCTGGGGATCGTGTTTGGGCCCACCCTGATGAGACCCCCTGAGGACAGCACCCTCACCACCCTCCA
TGACATGCGGTACCAAAAGCTGATCGTGCAGATTTTAATAGAAAACGAAGATGTTCTGTTTTAA

Translation (277 aa):
MISSLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVP
NDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRD
GEKADISANIYPDINIITGALKLYFRDLPIPIITYDTYSKFIEAAKISNADERLEAVHEVLMLLPPAHYE
TLRYLMIHLKKVTMNEKDNLMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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