NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8074.1 Public Homo sapiens 11 SLC22A11 24 110 108 CCDS HistoryNCBI Gene:55867Re-query CCDS DB by CCDS ID:8074.1Re-query CCDS DB by GeneID:55867See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301891.9 ENSP00000301891.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301891.9Link to Ensembl Protein Viewer:ENSP00000301891.4Re-query CCDS DB by Nucleotide ID:ENST00000301891Re-query CCDS DB by Protein ID:ENSP00000301891
Original member Current member NCBI NM_018484.4 NP_060954.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018484.4Link to Protein Sequence:NP_060954.1Re-query CCDS DB by Nucleotide ID:NM_018484Re-query CCDS DB by Protein ID:NP_060954Link to BLAST:NP_060954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060954.1 550 Q9NSA0-1 550 100% 0 0

Chromosomal Locations for CCDS 8074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64556000 64556392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64559135 64559238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64562004 64562158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64562267 64562435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64564308 64564428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64565222 64565337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64567599 64567813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64568670 64568778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64569652 64569858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64570979 64571042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGCGTTCTCGAAGCTCTTGGAGCAAGCCGGAGGCGTGGGCCTCTTCCAGACCCTGCAGGTGCTCACCT
TCATCCTCCCCTGCCTCATGATACCTTCCCAGATGCTCCTGGAGAACTTCTCAGCCGCCATCCCAGGCCA
CCGATGCTGGACACACATGCTGGACAATGGCTCTGCGGTTTCCACAAACATGACCCCCAAGGCCCTTCTG
ACCATCTCCATCCCGCCAGGCCCCAACCAGGGGCCCCACCAGTGCCGCCGCTTCCGCCAGCCACAGTGGC
AGCTCTTGGACCCCAATGCCACGGCCACCAGCTGGAGCGAAGCTGACACGGAGCCGTGTGTGGACGGCTG
GGTCTATGACCGCAGCGTCTTCACCTCCACCATCGTGGCCAAGTGGGACCTGGTGTGCAGCTCCCAGGGC
TTGAAGCCCCTAAGCCAGTCCATCTTCATGTCCGGGATCCTGGTGGGCTCCTTTATCTGGGGCCTCCTCT
CCTACCGGTTTGGGAGGAAGCCGATGCTGAGCTGGTGCTGCCTGCAGTTGGCCGTGGCGGGCACCAGCAC
CATCTTCGCCCCAACATTCGTCATCTACTGCGGCCTGCGGTTCGTGGCCGCTTTTGGGATGGCCGGCATC
TTTCTGAGTTCACTGACACTGATGGTGGAGTGGACCACGACCAGCAGGAGGGCGGTCACCATGACGGTGG
TGGGATGTGCCTTCAGCGCAGGCCAGGCGGCGCTGGGCGGCCTGGCCTTTGCCCTGCGGGACTGGAGGAC
TCTCCAGCTGGCAGCATCAGTGCCCTTCTTTGCCATCTCCCTGATATCCTGGTGGCTGCCAGAATCCGCC
CGGTGGCTGATTATTAAGGGCAAACCAGACCAAGCACTTCAGGAGCTCAGAAAGGTGGCCAGGATAAATG
GCCACAAGGAGGCCAAGAACCTGACCATAGAGGTGCTGATGTCCAGCGTGAAGGAGGAGGTGGCCTCTGC
AAAGGAGCCGCGGTCGGTGCTGGACCTGTTCTGCGTGCCCGTGCTCCGCTGGAGGAGCTGCGCCATGCTG
GTGGTGAATTTCTCTCTATTGATCTCCTACTATGGGCTGGTCTTCGACCTGCAGAGCCTGGGCCGTGACA
TCTTCCTCCTCCAGGCCCTCTTCGGGGCCGTGGACTTCCTGGGCCGGGCCACCACTGCCCTCTTGCTCAG
TTTCCTTGGCCGCCGCACCATCCAGGCGGGTTCCCAGGCCATGGCCGGCCTCGCCATTCTAGCCAACATG
CTGGTGCCGCAAGATTTGCAGACCCTGCGTGTGGTCTTTGCTGTGCTGGGAAAGGGATGTTTTGGGATAA
GCCTAACCTGCCTCACCATCTACAAGGCTGAACTCTTTCCAACGCCAGTGCGGATGACAGCAGATGGCAT
TCTGCATACAGTGGGCCGGCTGGGGGCTATGATGGGTCCCCTGATCCTGATGAGCCGCCAAGCCCTGCCC
CTGCTGCCTCCTCTCCTCTATGGCGTTATCTCCATTGCTTCCAGCCTGGTTGTGCTGTTCTTCCTCCCGG
AGACCCAGGGACTTCCGCTCCCTGACACTATCCAGGACCTGGAGAGCCAGAAATCAACAGCAGCCCAGGG
CAACCGGCAAGAGGCCGTCACTGTGGAAAGTACCTCGCTCTAG

Translation (550 aa):
MAFSKLLEQAGGVGLFQTLQVLTFILPCLMIPSQMLLENFSAAIPGHRCWTHMLDNGSAVSTNMTPKALL
TISIPPGPNQGPHQCRRFRQPQWQLLDPNATATSWSEADTEPCVDGWVYDRSVFTSTIVAKWDLVCSSQG
LKPLSQSIFMSGILVGSFIWGLLSYRFGRKPMLSWCCLQLAVAGTSTIFAPTFVIYCGLRFVAAFGMAGI
FLSSLTLMVEWTTTSRRAVTMTVVGCAFSAGQAALGGLAFALRDWRTLQLAASVPFFAISLISWWLPESA
RWLIIKGKPDQALQELRKVARINGHKEAKNLTIEVLMSSVKEEVASAKEPRSVLDLFCVPVLRWRSCAML
VVNFSLLISYYGLVFDLQSLGRDIFLLQALFGAVDFLGRATTALLLSFLGRRTIQAGSQAMAGLAILANM
LVPQDLQTLRVVFAVLGKGCFGISLTCLTIYKAELFPTPVRMTADGILHTVGRLGAMMGPLILMSRQALP
LLPPLLYGVISIASSLVVLFFLPETQGLPLPDTIQDLESQKSTAAQGNRQEAVTVESTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH