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Report for CCDS80755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80755.1 Public Mus musculus 7 Chrdl2 23 108 98 CCDS HistoryNCBI Gene:69121Re-query CCDS DB by CCDS ID:80755.1Re-query CCDS DB by GeneID:69121See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80755.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107084.7 ENSMUSP00000102699.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107084.7Link to Ensembl Protein Viewer:ENSMUSP00000102699.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107084Re-query CCDS DB by Protein ID:ENSMUSP00000102699
Original member Current member NCBI NM_001291320.1 NP_001278249.1 Accepted alive Link to Nucleotide Sequence:NM_001291320.1Link to Protein Sequence:NP_001278249.1Re-query CCDS DB by Nucleotide ID:NM_001291320Re-query CCDS DB by Protein ID:NP_001278249Link to BLAST:NP_001278249.1

Chromosomal Locations for CCDS 80755.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100010017 100010119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100016978 100017090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100020888 100020981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100021966 100022108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100023852 100023945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100025746 100025801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100027576 100027732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100028652 100028846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100029178 100029351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100033644 100033736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100034570 100034649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCGGCACAAAGATCAGACACCACTCTGGGTAGGACCCGAACCTGTTGCGCATTCTTGTATTCAGGAGT
TCTTCATTGTGTCTCAGCCAAGTTTGTTTGCTCGCTCGGGCAAAGTCTGCCTTTTCGGTGAAAAGATATA
TACCCCCGGCCAGAGCTGGCACCCCTACTTGGAACCACAAGGCACGATATACTGCGTGCGCTGTACCTGC
TCTGAGAATGGACATGTGAATTGTTACCGCCTCCGCTGCCCACCCCTTCACTGCTCACAGCCTGTGATGG
AGCCACAGCAATGCTGTCCCAGGTGTGTGGATCCTCATGTCCCCTCTGGCCTCCGAGTTCCCCTAAAGTC
CTGCCAGCTCAATGAGACCACATACCAACATGGAGAGATCTTCAGTGCCCAGGAGCTGTTCCCTGCCCGC
CTGTCCAACCAGTGTGTCCTGTGTAGCTGTATTGAAGGCCACACTTACTGTGGTCTCATGACCTGTCCTG
AACCCAGCTGCCCCACCACACTCCCTCTGCCTGATTCCTGCTGTCAGACCTGCAAAGACAGGACAACTGA
GAGTTCCACAGAAGAAAACTTGACACAGCTGCAGCATGGAGAGAGACATTCCCAGGATCCATGCTCGGAG
AGGAGAGGCCCCAGCACGCCAGCCCCCACCAGCCTCAGCTCCCCTCTGGGCTTCATCCCTCGCCACTTCC
AGTCAGTAGGAATGGGCAGCACAACCATCAAGATTATCTTGAAGGAGAAACATAAAAAAGCTTGCACACA
CAATGGGAAGACATACTCCCATGGGGAGGTGTGGCACCCCACTGTGCTCTCCTTTGGCCCCATGCCCTGC
ATCCTGTGCACATGTATCGATGGCTACCAGGACTGCCACCGTGTGACCTGCCCCACCCAATATCCCTGCA
GTCAACCCAAGAAAGTGGCTGGGAAGTGCTGCAAGATCTGCCCAGAGGACGAGGCGGAAGATGACCACAG
TGAGGTCATTTCCACCCGGTGTCCCAAGGTACCAGGCCAGTTCCAGGTGTACACGTTGGCATCTCCAAGC
CCAGACAGCCTACACCGCTTTGTCCTGGAGCATGAAGCCTCTGACCAGGTAGAGATGTACATTTGGAAGC
TGGTGAAAGGAATCTACCACTTGGTTCAGATCAAGAGAGTCAGGAAGCAAGATTTCCAGAAAGAGGCTCA
GAACTTCCGGCTGCTCACCGGCACCCATGAAGGTTACTGGACCGTCTTCCTAGCCCAGACTCCAGAGCTG
AAAGTTACAGCCAGCCCAGACAAAGTGACCAAGACATTATAG

Translation (433 aa):
MRHKDQTPLWVGPEPVAHSCIQEFFIVSQPSLFARSGKVCLFGEKIYTPGQSWHPYLEPQGTIYCVRCTC
SENGHVNCYRLRCPPLHCSQPVMEPQQCCPRCVDPHVPSGLRVPLKSCQLNETTYQHGEIFSAQELFPAR
LSNQCVLCSCIEGHTYCGLMTCPEPSCPTTLPLPDSCCQTCKDRTTESSTEENLTQLQHGERHSQDPCSE
RRGPSTPAPTSLSSPLGFIPRHFQSVGMGSTTIKIILKEKHKKACTHNGKTYSHGEVWHPTVLSFGPMPC
ILCTCIDGYQDCHRVTCPTQYPCSQPKKVAGKCCKICPEDEAEDDHSEVISTRCPKVPGQFQVYTLASPS
PDSLHRFVLEHEASDQVEMYIWKLVKGIYHLVQIKRVRKQDFQKEAQNFRLLTGTHEGYWTVFLAQTPEL
KVTASPDKVTKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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