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Report for CCDS8163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8163.1 Public Homo sapiens 11 PTPRCAP 24 110 108 CCDS HistoryNCBI Gene:5790Re-query CCDS DB by CCDS ID:8163.1Re-query CCDS DB by GeneID:5790See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8163.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326294.4 ENSP00000325589.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326294.4Link to Ensembl Protein Viewer:ENSP00000325589.3Re-query CCDS DB by Nucleotide ID:ENST00000326294Re-query CCDS DB by Protein ID:ENSP00000325589
Original member Current member NCBI NM_005608.3 NP_005599.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005608.3Link to Protein Sequence:NP_005599.1Re-query CCDS DB by Nucleotide ID:NM_005608Re-query CCDS DB by Protein ID:NP_005599Link to BLAST:NP_005599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005599.1 206 Q14761 206 100% 0 0

Chromosomal Locations for CCDS 8163.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67435733 67436350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67437617 67437619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCTCTGCCCTGCACCTTAGGGCTCGGGATGCTGCTGGCCCTGCCAGGGGCCTTGGGCTCGGGTGGCA
GCGCGGAGGACAGCGTGGGCTCCAGCTCTGTCACCGTTGTCCTGCTGCTGCTGCTGCTCCTACTGCTGGC
CACTGGCCTAGCACTGGCCTGGCGCCGCCTCAGCCGTGACTCAGGGGGCTACTACCACCCGGCCCGCCTA
GGTGCCGCGCTGTGGGGCCGCACGCGGCGCCTGCTCTGGGCCAGCCCCCCAGGTCGCTGGCTGCAGGCCC
GAGCTGAGCTGGGGTCCACAGACAATGACCTTGAGCGACAGGAGGATGAGCAGGACACAGACTATGACCA
CGTCGCGGATGGTGGCCTGCAGGCTGACCCTGGGGAAGGCGAGCAGCAATGTGGAGAGGCGTCCAGCCCA
GAGCAGGTCCCCGTGCGGGCTGAGGAAGCCAGAGACAGTGACACGGAGGGCGACCTGGTCCTCGGCTCCC
CAGGACCAGCGAGCGCAGGGGGCAGTGCTGAGGCCCTGCTGAGTGACCTGCACGCCTTTGCTGGCAGCGC
AGCCTGGGATGACAGCGCCAGGGCAGCTGGGGGCCAGGGCCTCCATGTCACCGCACTGTAG

Translation (206 aa):
MALPCTLGLGMLLALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRDSGGYYHPARL
GAALWGRTRRLLWASPPGRWLQARAELGSTDNDLERQEDEQDTDYDHVADGGLQADPGEGEQQCGEASSP
EQVPVRAEEARDSDTEGDLVLGSPGPASAGGSAEALLSDLHAFAGSAAWDDSARAAGGQGLHVTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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