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Report for CCDS81632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81632.1 Public Homo sapiens 11 TRAPPC4 24 110 108 CCDS HistoryNCBI Gene:51399Re-query CCDS DB by CCDS ID:81632.1Re-query CCDS DB by GeneID:51399See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81632.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000528230.5 ENSP00000436827.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528230.5Link to Ensembl Protein Viewer:ENSP00000436827.1Re-query CCDS DB by Nucleotide ID:ENST00000528230Re-query CCDS DB by Protein ID:ENSP00000436827
Original member Current member NCBI NM_001318490.2 NP_001305419.1 Accepted alive Link to Nucleotide Sequence:NM_001318490.2Link to Protein Sequence:NP_001305419.1Re-query CCDS DB by Nucleotide ID:NM_001318490Re-query CCDS DB by Protein ID:NP_001305419Link to BLAST:NP_001305419.1

Chromosomal Locations for CCDS 81632.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119018796 119018970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119019143 119019188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119020150 119020253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119021760 119021886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119023321 119023399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCGATTTTTAGTGTGTATGTGGTGAACAAAGCTGGCGGCTTGATTTACCAGTTGGACAGCTACGCGC
CACGGGCTGAGGCTGAGAAAACTTTCAGTTATCCGCTGGATCTGCTGCTCAAGCTACACGATGAGCGTGT
GTTGGTTGCTTTCGGCCAGCGGGACGGCATCCGAGTGGGTCATGCAGTGCTGGCCATCAATGGCATGGAC
GTGAATGGCAGGCTCTTTGCCATCGGCTCCCAGCTGTCTCCTGAACAGGGAAGCTCAGGCATTGAGATGC
TGGAGACAGACACATTCAAATTGCACTGCTACCAGACACTGACAGGGATCAAGTTTGTGGTTCTAGCAGA
TCCTAGGCAAGCTGGAATAGATTCTCTTCTCCGAAAGATTTATGAGATTTACTCAGACTTTGCCCTCAAG
AATCCATTCTATTCCTTAGAAATGCCTATCAGGTGTGAGCTCTTTGACCAGAACCTGAAGCTAGCTCTGG
AGGTGGCAGAGAAGGCTGGAACTTTTGGACCTGGGTCATAG

Translation (176 aa):
MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMD
VNGRLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALK
NPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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