NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82232.1 Public Homo sapiens 17 B3GNTL1 24 110 108 CCDS HistoryNCBI Gene:146712Re-query CCDS DB by CCDS ID:82232.1Re-query CCDS DB by GeneID:146712See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000572977.5 ENSP00000459327.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572977.5Link to Ensembl Protein Viewer:ENSP00000459327.1Re-query CCDS DB by Nucleotide ID:ENST00000572977Re-query CCDS DB by Protein ID:ENSP00000459327
Original member Current member NCBI NM_001320743.2 NP_001307672.1 Accepted alive Link to Nucleotide Sequence:NM_001320743.2Link to Protein Sequence:NP_001307672.1Re-query CCDS DB by Nucleotide ID:NM_001320743Re-query CCDS DB by Protein ID:NP_001307672Link to BLAST:NP_001307672.1

Chromosomal Locations for CCDS 82232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82946903 82946983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82956695 82956769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82957181 82957249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82957359 82957494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82961057 82961181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82965651 82965716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGCCCACCTGGTTCTGCTCGCGAGCGTGGTTCTCCCACGTGGGCCCCTTTAACGAGGGAGGTCAGGGCG
TCCCGGAGGACCTGCTGTTCTTCTACGAGCACCTCAGGAAGGGCGGCGGCGTCATCCGCGTGGACCAGAG
TCTCCTGCTGTATCGCCACCACCCACAGGCGGCCACGCACTGCGTCCTCGAGACGACCATCTGGACCCAC
CGCGTCCGCTTCCTGGAAGAGCAGGCCCTGCCCCGCTGGGCGGCCTTCACCATCTGGAACGCTGGCAAGC
AGGGGCGCCGGCTGTACCGCAGCTTGACTGCCGGCAGCCAGCGCAAGGTGGTGGCATTCTGTGACGTGGA
CGAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTCAGGAAAGACCCAAGCCCCGAATCCCC
ATCCTGCACTTCCGAGCCGCCCGGCCACCCTTCGTCATCTGCGTGAAGCTGGACCTCACAGGGGGCGCCT
TTGAGGACAACCTGAGGTCACTGCACTTGCAGGAGGGCCAGGACTTCCTTCACTTCAGCTGA

Translation (183 aa):
MPTWFCSRAWFSHVGPFNEGGQGVPEDLLFFYEHLRKGGGVIRVDQSLLLYRHHPQAATHCVLETTIWTH
RVRFLEEQALPRWAAFTIWNAGKQGRRLYRSLTAGSQRKVVAFCDVDENKIRKGFYCHEDSQERPKPRIP
ILHFRAARPPFVICVKLDLTGGAFEDNLRSLHLQEGQDFLHFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH