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Report for CCDS82442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82442.1 Public Homo sapiens 2 C1GALT1C1L 24 110 108 CCDS HistoryNCBI Gene:728819Re-query CCDS DB by CCDS ID:82442.1Re-query CCDS DB by GeneID:728819See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000475092.4 ENSP00000489061.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000475092.4Link to Ensembl Protein Viewer:ENSP00000489061.1Re-query CCDS DB by Nucleotide ID:ENST00000475092Re-query CCDS DB by Protein ID:ENSP00000489061
Original member Current member NCBI NM_001101330.3 NP_001094800.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001101330.3Link to Protein Sequence:NP_001094800.1Re-query CCDS DB by Nucleotide ID:NM_001101330Re-query CCDS DB by Protein ID:NP_001094800Link to BLAST:NP_001094800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094800.1 315 P0DN25 315 100% 0 0

Chromosomal Locations for CCDS 82442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 43675375 43676322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGTTTCCGCTAGTGGGACATCATTTTTTAAGGGTATGTTGCTTGGGAGCATTTCCTGGGTTTTGATAA
CTATGTTTGGCCAAATTCACATTCGACACAGAGGTCAAACTCAAGACCACGAGCACCATCACCTTCGTCC
ACCTAACAGGAACGATTTCTTAAACACTTCAAAAGTGATACTCTTGGAGCTCAGTAAAAGTATTCGTGTT
TTCTGTATCATCTTTGGAGAATCCGAAGATGAGAGTTACTGGGCTGTACTGAAAGAGACCTGGACCAAAC
ACTGTGACAAAGCAGAGCTCTACGATACTAAAAATGATAATTTGTTCAATATAGAAAGTAATGACAGGTG
GGTACAGATGAGGACCGCTTACAAATACGTCTTTGAAAAGTATGGTGACAACTACAACTGGTTCTTCCTT
GCACTTCCCACTACGTTTGCTGTCATTGAAAATTTAAAGTACCTTTTGTTTACAAGGGATGCATCCCAGC
CCTTCTATCTGGGCCACACTGTTATATTTGGAGACCTCGAATACGTGACTGTGGAAGGAGGGATTGTCTT
AAGCAGAGAGTTGATGAAAAGACTTAACAGACTTCTCGATAACTCTGAGACCTGTGCAGATCAAAGTGTG
ATTTGGAAGTTATCTGAAGATAAGCAGCTGGCAATATGCCTGAAATATGCAGGAGTTCATGCAGAAAATG
CAGAGGATTATGAAGGAAGAGATGTATTTAATACAAAACCAATCGCACAGCTTATTGAAGAGGCATTGTC
TAATAACCCTCAGCAAGTAGTAGAAGGCTGCTGTTCAGATATGGCTATTACTTTCAATGGACTGACCCCC
CAAAAGATGGAAGTAATGATGTATGGCCTGTACCGGCTCAGGGCATTTGGACACTATTTCAATGACACAC
TCGTTTTCTTGCCTCCAGTTGGTTCAGAAAATGACTGA

Translation (315 aa):
MVSASGTSFFKGMLLGSISWVLITMFGQIHIRHRGQTQDHEHHHLRPPNRNDFLNTSKVILLELSKSIRV
FCIIFGESEDESYWAVLKETWTKHCDKAELYDTKNDNLFNIESNDRWVQMRTAYKYVFEKYGDNYNWFFL
ALPTTFAVIENLKYLLFTRDASQPFYLGHTVIFGDLEYVTVEGGIVLSRELMKRLNRLLDNSETCADQSV
IWKLSEDKQLAICLKYAGVHAENAEDYEGRDVFNTKPIAQLIEEALSNNPQQVVEGCCSDMAITFNGLTP
QKMEVMMYGLYRLRAFGHYFNDTLVFLPPVGSEND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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