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Report for CCDS83678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83678.1 Public Mus musculus 10 Ginm1 23 108 98 CCDS HistoryNCBI Gene:215751Re-query CCDS DB by CCDS ID:83678.1Re-query CCDS DB by GeneID:215751See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124838.1 ENSMUSP00000119129.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124838.1Link to Ensembl Protein Viewer:ENSMUSP00000119129.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124838Re-query CCDS DB by Protein ID:ENSMUSP00000119129
Original member Current member NCBI NM_001346750.1 NP_001333679.1 Accepted alive Link to Nucleotide Sequence:NM_001346750.1Link to Protein Sequence:NP_001333679.1Re-query CCDS DB by Nucleotide ID:NM_001346750Re-query CCDS DB by Protein ID:NP_001333679Link to BLAST:NP_001333679.1

Chromosomal Locations for CCDS 83678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7768477 7768585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7770357 7770520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7773298 7773431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7773948 7774104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7775218 7775369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7777774 7777870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7779303 7779362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7780761 7780874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGAGGGCGGCCTGTCGGCGCCGCTGTCCGTCCGGTTGTTGCTGTTCATAGCGCTGCCAGCCGCGGGAT
GGCTGACCACCAACGCGCCCAGGCCGCCGTCCACAGCCCCGCAGAATGGCATCCAAATCAATGTAACTAC
CCTGAGCAAGAGTGGGGAAGAGTCTGAAGAACAGGTTGTTCTTAACATAACCTATGAGCGTGGACAGGTA
TATGTAAATGACTTACCTGTAAATAGTGGTGTAACCCGAATAAGCTGTCAGACTTTGATAGTGAAGAGTG
AAAATCTGGAAAAATTGGAGGAGAAACACTATTTTGGAATTGTCACTGTGAGGATCTTAGTTCTCGAGAG
GCCTGTGACGTACAGTGCCAGCTCCCAGCTGATTGTCATCCAAGGAGAGGTTGTGGAGATTGACGGGAGA
CAAGCTCAACAAAAGAATGTTACTGAAATTGACATTTTAGTTAAGAACCAGAGAGTACTCAGATATTCAA
GCTATTTCCTTCCTTTGGAAGAAAGCATGCTTTATTCTATTTCTCAAGACAGTGACATTTTATTCACGCT
TCCTGACTTTTCCAAAAAAGTAGGAACTGTTAGCTCACTGCAGACCACCAGCCACTACCTCATGGGGAAT
GTGGAAACCACTGTGGATGGAAATGCTTTACCTGGCAAGTTGCCTGAGACTCCTCTTAGAGCAGAGCCTC
CATCTTCATACAAGGTAATGTGCCAGTGGATGGAGAAGCTGAGAAAAGCGCTCTGTAGGTTCTGGAGCAG
TGTGGTCCCTGTGCTCTTCATGTTTCTGGACGTCATGGTGGTTGGAGTTCTGGGAGCAGCAGGAGTCATA
GCAGTGTTAAAGCTGCTCTTCCCAGTGTGTGAGAACAAAGGAATTCTTCAGGTGGATAAAATGAATGGGA
TCTCGGTACCTATCATCTTATACCCAGACGGCTCTGAGAAAACAGCACAAAAACTTACAGATAAAACAGA
TATTTAA

Translation (328 aa):
MEGGLSAPLSVRLLLFIALPAAGWLTTNAPRPPSTAPQNGIQINVTTLSKSGEESEEQVVLNITYERGQV
YVNDLPVNSGVTRISCQTLIVKSENLEKLEEKHYFGIVTVRILVLERPVTYSASSQLIVIQGEVVEIDGR
QAQQKNVTEIDILVKNQRVLRYSSYFLPLEESMLYSISQDSDILFTLPDFSKKVGTVSSLQTTSHYLMGN
VETTVDGNALPGKLPETPLRAEPPSSYKVMCQWMEKLRKALCRFWSSVVPVLFMFLDVMVVGVLGAAGVI
AVLKLLFPVCENKGILQVDKMNGISVPIILYPDGSEKTAQKLTDKTDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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