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Report for CCDS8370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8370.1 Public Homo sapiens 11 RBM7 24 110 108 CCDS HistoryNCBI Gene:10179Re-query CCDS DB by CCDS ID:8370.1Re-query CCDS DB by GeneID:10179See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8370.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540163.5 ENSP00000439918.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540163.5Link to Ensembl Protein Viewer:ENSP00000439918.1Re-query CCDS DB by Nucleotide ID:ENST00000540163Re-query CCDS DB by Protein ID:ENSP00000439918
Original member Current member NCBI NM_016090.4 NP_057174.1 Accepted alive Link to Nucleotide Sequence:NM_016090.4Link to Protein Sequence:NP_057174.1Re-query CCDS DB by Nucleotide ID:NM_016090Re-query CCDS DB by Protein ID:NP_057174Link to BLAST:NP_057174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057174.1 266 Q9Y580 266 100% 0 0

Chromosomal Locations for CCDS 8370.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 114400672 114400767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114401698 114401860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114402828 114402915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114405709 114405799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114407445 114407807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGGGGCGGCGGCGGCGGAAGCGGATCGCACTCTCTTTGTGGGCAACCTTGAAACGAAAGTGACCGAGG
AGCTCCTTTTCGAGCTTTTCCACCAGGCTGGGCCAGTAATAAAGGTGAAAATTCCAAAAGATAAGGATGG
TAAACCAAAGCAGTTTGCGTTTGTGAATTTCAAACATGAAGTGTCTGTTCCTTATGCAATGAATCTACTT
AATGGAATCAAACTTTATGGAAGGCCTATCAAAATTCAATTTAGATCAGGAAGTAGTCATGCCCCACAAG
ATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGCCCTACCTCCACATCTCCTAGCAGGTA
CGAAAGGACTATGGATAACATGACTTCATCAGCACAGATAATTCAGAGATCTTTCTCTTCTCCAGAAAAT
TTTCAGAGACAAGCAGTGATGAACAGTGCTTTGAGACAAATGTCATATGGTGGAAAATTTGGTTCTTCAC
CTCTGGATCAATCAGGATTTTCACCATCAGTTCAATCACACAGTCATAGTTTCAATCAGTCTTCAAGCTC
CCAGTGGCGCCAAGGTACACCATCATCACAGCGTAAAGTCAGAATGAATTCTTATCCCTACCTAGCAGAT
AGACATTATAGCCGGGAACAGCGTTACACTGATCATGGGTCTGACCATCATTACAGAGGAAAGAGAGATG
ATTTCTTCTATGAAGACAGGAATCATGATGACTGGAGCCATGACTATGATAACAGAAGAGACAGTAGTAG
AGATGGAAAATGGCGCTCATCTCGACACTAA

Translation (266 aa):
MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL
NGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTSSAQIIQRSFSSPEN
FQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLAD
RHYSREQRYTDHGSDHHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDGKWRSSRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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