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Report for CCDS83976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83976.1 Public Mus musculus 12 Cox16 23 108 98 CCDS HistoryNCBI Gene:66272Re-query CCDS DB by CCDS ID:83976.1Re-query CCDS DB by GeneID:66272See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110340.8 ENSMUSP00000105969.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110340.8Link to Ensembl Protein Viewer:ENSMUSP00000105969.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110340Re-query CCDS DB by Protein ID:ENSMUSP00000105969
Original member Current member NCBI NM_001309809.2 NP_001296738.1 Accepted alive Link to Nucleotide Sequence:NM_001309809.2Link to Protein Sequence:NP_001296738.1Re-query CCDS DB by Nucleotide ID:NM_001309809Re-query CCDS DB by Protein ID:NP_001296738Link to BLAST:NP_001296738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001296738.1 77 Q9CR63-2 77 100% 0 0

Chromosomal Locations for CCDS 83976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 81359315 81359344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81474587 81474649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81480931 81481002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81484897 81484965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (234 nt):
ATGATTGCGCCCGCTGTGTTGCGAGCTCTGCGTAAGAACAAGACTCTACGCTATGGAGTTCCCATGTTGT
TGCTGGTTGTTGGAGGTTCTTTTGGTCTTCGTGAATTTTCACAAATCCGGTACGATGCTGTGACAATTAA
GATTGATCCTGAATTGGAGAAAAAATTGAAAGTGAATAAAATAACTTTAGAGTCAGAGTATGAGAGGCTG
TTATGTTTATTGTGCAGACAATGA

Translation (77 aa):
MIAPAVLRALRKNKTLRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKIDPELEKKLKVNKITLESEYERL
LCLLCRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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