NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS83978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83978.1 Public Mus musculus 12 Cox16 23 108 98 CCDS HistoryNCBI Gene:66272Re-query CCDS DB by CCDS ID:83978.1Re-query CCDS DB by GeneID:66272See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168463.7 ENSMUSP00000127295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168463.7Link to Ensembl Protein Viewer:ENSMUSP00000127295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168463Re-query CCDS DB by Protein ID:ENSMUSP00000127295
Original member Current member NCBI NM_001309808.1 NP_001296737.1 Accepted alive Link to Nucleotide Sequence:NM_001309808.1Link to Protein Sequence:NP_001296737.1Re-query CCDS DB by Nucleotide ID:NM_001309808Re-query CCDS DB by Protein ID:NP_001296737Link to BLAST:NP_001296737.1

Chromosomal Locations for CCDS 83978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 81472136 81472171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81474587 81474649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81480931 81481002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81484897 81484965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGATTGCGCCCGCTGTGTTGCGAGCTCTGCGTAAGAACAAGACTCTACGCTATGGAGTTCCCATGTTGT
TGCTGGTTGTTGGAGGTTCTTTTGGTCTTCGTGAATTTTCACAAATCCGGTACGATGCTGTGACAATTAA
GATTGATCCTGAATTGGAGAAAAAATTGAAAGTGAATAAAATAACTTTAGAGTCAGAGTATGAGGAAGAA
GATTCCAGACCTGTGGAAACCTGGATGTGA

Translation (79 aa):
MIAPAVLRALRKNKTLRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKIDPELEKKLKVNKITLESEYEEE
DSRPVETWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH