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Report for CCDS83987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83987.1 Public Mus musculus 12 Dnal1 23 108 98 CCDS HistoryNCBI Gene:105000Re-query CCDS DB by CCDS ID:83987.1Re-query CCDS DB by GeneID:105000See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046340.8 ENSMUSP00000037076.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046340.8Link to Ensembl Protein Viewer:ENSMUSP00000037076.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000046340Re-query CCDS DB by Protein ID:ENSMUSP00000037076
Original member Current member NCBI NM_001346528.1 NP_001333457.1 Accepted alive Link to Nucleotide Sequence:NM_001346528.1Link to Protein Sequence:NP_001333457.1Re-query CCDS DB by Nucleotide ID:NM_001346528Re-query CCDS DB by Protein ID:NP_001333457Link to BLAST:NP_001333457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333457.1 151 Q05A62-3 151 100% 0 0

Chromosomal Locations for CCDS 83987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84124550 84124584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84126962 84127017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84131332 84131387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84135567 84135693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84136497 84136637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84138354 84138394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGACGCATCTCTATCCACACTTGGTAACTGCGAGAAGCTTTCCCTGTCTACAAACTGCATTGAAAAAA
TTGCCAACCTGAATGGCCTAAAAAACTTGAGGATTTTGTCCTTAGGAAGAAACAACATAAAGAACCTAAA
TGGACTGGAAGCAGTAGGAGAAACACTGGAAGAACTGTGGATCTCCTACAATTTTATTGAGAAGTTGAAA
GGAATCCATGTAATGAAGAAACTGAAGATTCTCTACATGTCTAATAACCTGGTAAAAGACTGGGCTGAGT
TCCTGAAGCTGGCCGAGCTGCCGTGCCTGGAGGACCTGGTGTTCGTCGGTAATCCCCTGGAGGAGAAACA
CTCTGCCGAGGGCAACTGGATCGATGAAGCAACCAAGAGAGTGCCCAAGCTGAAAAAGCTGGATGGTACT
CCAGTAATTAAGGAGGATGAAGAAGAGGAAAGCTAA

Translation (151 aa):
MDASLSTLGNCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGETLEELWISYNFIEKLK
GIHVMKKLKILYMSNNLVKDWAEFLKLAELPCLEDLVFVGNPLEEKHSAEGNWIDEATKRVPKLKKLDGT
PVIKEDEEEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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