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Report for CCDS84000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84000.1 Public Mus musculus 12 Papola 23 108 98 CCDS HistoryNCBI Gene:18789Re-query CCDS DB by CCDS ID:84000.1Re-query CCDS DB by GeneID:18789See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170002.7 ENSMUSP00000126275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170002.7Link to Ensembl Protein Viewer:ENSMUSP00000126275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170002Re-query CCDS DB by Protein ID:ENSMUSP00000126275
Original member Current member NCBI NM_001347440.1 NP_001334369.1 Accepted alive Link to Nucleotide Sequence:NM_001347440.1Link to Protein Sequence:NP_001334369.1Re-query CCDS DB by Nucleotide ID:NM_001347440Re-query CCDS DB by Protein ID:NP_001334369Link to BLAST:NP_001334369.1

Chromosomal Locations for CCDS 84000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 105784907 105784914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105799651 105799824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105800684 105800750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105804927 105805008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105806487 105806596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105807165 105807218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105808555 105808666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105809343 105809432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105809524 105809662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105811037 105811109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105812274 105812394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105813198 105813282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105818356 105818409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105818780 105818899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105820341 105820450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105823556 105823677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105826944 105827086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105828281 105828381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105829057 105829277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105834710 105834784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105836765 105836860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGCCGTTTCCAGTTACAACGCAGGGATCACAACAAACGCAGCCACCACAGAGGCACTATGGCATTACCT
CTCCTATCAGCTTAGCGGCCCCCAAGGAGACTGACTGCCTACTCACACAGAAGCTCATCGAGACGCTGAA
GCCCTTTGGGGTTTTTGAAGAAGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAATTAAATAAC
CTGGTGAAAGAATGGATTCGAGAAATCAGTGAAAGCAAGAATCTCCCACAATCTGTAATTGAAAATGTTG
GAGGGAAGATTTTTACATTTGGATCTTACAGACTAGGAGTCCACACGAAAGGTGCTGATATTGATGCGTT
GTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCTATGATAAATTGAAATTACAA
GAAGAAGTGAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTACCAGTTATCAAACTCTGTTTTGATGGAA
TAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACTATTCCAGAAGATTTGGACCTACGAGATGA
CAGTCTGCTTAAAAACCTAGATATAAGATGCATAAGAAGCCTTAATGGTTGCAGGGTAACCGATGAAATT
TTACATCTAGTACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCCATCAAACTGTGGGCCAAACGGC
ACAACATCTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTG
CCAGCTTTATCCAAATGCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAA
TGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCAATCTTAATTTGCCTGTGTGGGACCCAAGGG
TAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATACCCACAGCAGAACTCCACGTA
CAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTATCACAGATGAA
ATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAGAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCGCCCACGGAAAAGCAGCGTCTGGAATGGGTGGGCTTGGTGGAATCAAA
AATCCGCATCCTGGTTGGAAGCTTGGAGAAGAATGAGTTTATTACACTGGCTCATGTGAATCCCCAGTCA
TTTCCAGCCCCCAAAGAAAGTCCTGACAGGGAAGAATTTCGCACAATGTGGGTGATTGGGTTAGTGTTTA
AAAAAACTGAAAACTCTGAAAATCTCAGTGTCGACCTCACCTATGATATCCAGTCTTTCACAGACACAGT
TTATAGGCAAGCAATAAACAGCAAAATGTTTGAGTTGGATATGAAGATTGCAGCAATGCATGTGAAGAGA
AAGCAACTCCATCAGCTGCTGCCTAGTCACGTGCTTCAGAAGAGGAAGAAGCATTCAACAGAAGGAGTCA
AGTTAACAGCTCTGAATGACAGCAGCCTTGACTTGTCTATGGACAGTGATAACAGCATGTCTGTGCCTTC
ACCCACCAGTGCTATGAAGACCAGTCCATTGAATAGTTCTGGCAGCTCCCAGGGCAGAAACAGTCCTGCT
CCAGCTGTGACCGCAGCATCTGTGACCAGCATCCAGGCTTCTGAGGTTTCTGTACCGCAAGCAAATTCCA
GTGAAAGCCCAGGGGGTCCATCGAGCGAAAGCATTCCTCAAACTGCCACACAGCCAGCCATTTCTCCACC
ACCAAAGCCTACAGTCTCCAGAGTTGTCTCCTCAACACGACTGGTAAACCCATCGCCTAGACCTTCAGGA
AACACAGCAACAAAAGTCCCTAATCCTATAGTAGGAGTCAAGAGAACGTCCTCACCCAATAAAGAAGAAA
GTCCTAAGAAAACCAAAACAGAAGAGGAACAAGTTGATCTGGAGACAAGTGCGGTTCAATCAGAAACTGT
TCCGGCATCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCTCTC
CCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGACTGAATCGGTAA

Translation (718 aa):
MPFPVTTQGSQQTQPPQRHYGITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNN
LVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQ
EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
LHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE
WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDE
ILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
FPAPKESPDREEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKR
KQLHQLLPSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRNSPA
PAVTAASVTSIQASEVSVPQANSSESPGGPSSESIPQTATQPAISPPPKPTVSRVVSSTRLVNPSPRPSG
NTATKVPNPIVGVKRTSSPNKEESPKKTKTEEEQVDLETSAVQSETVPASASLLASQKTSSTDLSDIPAL
PANPIPVIKNSIKLRLNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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