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Report for CCDS84012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84012.1 Public Mus musculus 13 Hfe 23 108 98 CCDS HistoryNCBI Gene:15216Re-query CCDS DB by CCDS ID:84012.1Re-query CCDS DB by GeneID:15216See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091707.12 ENSMUSP00000089299.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091707.12Link to Ensembl Protein Viewer:ENSMUSP00000089299.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000091707Re-query CCDS DB by Protein ID:ENSMUSP00000089299
Original member Current member NCBI NM_001347493.1 NP_001334422.1 Accepted alive Link to Nucleotide Sequence:NM_001347493.1Link to Protein Sequence:NP_001334422.1Re-query CCDS DB by Nucleotide ID:NM_001347493Re-query CCDS DB by Protein ID:NP_001334422Link to BLAST:NP_001334422.1

Chromosomal Locations for CCDS 84012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23704386 23704426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23705624 23705734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23705861 23706136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23706767 23707066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23710627 23710714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGAGCCTATCAGCTGGGCTCCCTGTGCGGCCGCTGCTGCTGCTGCTGCTACTGCTGTGGTCCGTGGCCC
CGCAGGCACTGCCACCGCTCACGAAGTTGGGAGTGGTGTCCGAGTCCCACATCCTGCAGGTGGTCCTAGG
CTGTGAGGTGCATGAAGACAACAGTACCAGCGGCTTCTGGAGATATGGTTATGACGGGCAAGATCACCTG
GAATTCTGCCCCAAGACACTAAACTGGAGCGCAGCCGAGCCAGGGGCCTGGGCCACCAAGGTGGAATGGG
ACGAGCACAAGATCCGTGCCAAACAGAACAGGGACTACCTGGAGAAGGACTGCCCCGAGCAGCTGAAACG
GCTCCTGGAGCTGGGGAGAGGCGTTCTGGGACAGCAAGTGCCTACTTTGGTGAAAGTGACTCGCCACTGG
GCCTCTACGGGGACCTCTCTAAGGTGTCAGGCTCTGGACTTCTTCCCCCAGAACATCACTATGAGGTGGT
TGAAGGACAACCAACCACTGGATGCCAAAGATGTCAACCCCGAGAAGGTGCTACCTAACGGGGATGAGAC
CTATCAAGGCTGGCTGACATTGGCCGTGGCCCCTGGGGACGAGACAAGGTTCACCTGTCAAGTGGAGCAC
CCAGGCCTGGACCAGCCTCTCACTGCCTCTTGGGAGCCCTTGCAATCTCAGGCCATGATTATCGGAATCA
TCAGTGGAGTCACCGTCTGTGCCATCTTCTTGGTTGGAATTCTGTTCCTAATCTTAAGGAAAAGGAAGGC
TTCAGGAGGAACCATGGGTGGCTATGTCTTAACAGACTGTGAGTGA

Translation (271 aa):
MSLSAGLPVRPLLLLLLLLWSVAPQALPPLTKLGVVSESHILQVVLGCEVHEDNSTSGFWRYGYDGQDHL
EFCPKTLNWSAAEPGAWATKVEWDEHKIRAKQNRDYLEKDCPEQLKRLLELGRGVLGQQVPTLVKVTRHW
ASTGTSLRCQALDFFPQNITMRWLKDNQPLDAKDVNPEKVLPNGDETYQGWLTLAVAPGDETRFTCQVEH
PGLDQPLTASWEPLQSQAMIIGIISGVTVCAIFLVGILFLILRKRKASGGTMGGYVLTDCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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