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Report for CCDS84071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84071.1 Public Mus musculus 13 Tcstv2a 23 108 98 CCDS HistoryNCBI Gene:236546Re-query CCDS DB by CCDS ID:84071.1Re-query CCDS DB by GeneID:236546See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179905.1 ENSMUSP00000136309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179905.1Link to Ensembl Protein Viewer:ENSMUSP00000136309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179905Re-query CCDS DB by Protein ID:ENSMUSP00000136309
Original member Current member EBI ENSMUST00000181748.1 ENSMUSP00000137949.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181748.1Link to Ensembl Protein Viewer:ENSMUSP00000137949.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181748Re-query CCDS DB by Protein ID:ENSMUSP00000137949
Original member Current member NCBI NM_001310627.1 NP_001297556.1 Accepted alive Link to Nucleotide Sequence:NM_001310627.1Link to Protein Sequence:NP_001297556.1Re-query CCDS DB by Nucleotide ID:NM_001310627Re-query CCDS DB by Protein ID:NP_001297556Link to BLAST:NP_001297556.1
Original member Current member NCBI NM_199060.2 NP_951015.1 Accepted alive Link to Nucleotide Sequence:NM_199060.2Link to Protein Sequence:NP_951015.1Re-query CCDS DB by Nucleotide ID:NM_199060Re-query CCDS DB by Protein ID:NP_951015Link to BLAST:NP_951015.1

Chromosomal Locations for CCDS 84071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 120263802 120264317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGATAAAGCCAAGAAAATGATGCAGTCCATTCCTAGTTTTGTCAAGGATACATCAGATATTGAAGAAC
ATGCAGTGCCCAGTGCACAGGTCTTGCCAGCCCAGAGTACAAGGTGTTCCAAGTCTGAGACACTTTGTTT
CAGCAAAGAGCAAAGCCATTGCTCTGAGGATGGCTGGATTGCCAATTGGGATCTATACTCCTTTTGTGTA
TTTGAGAGTGTGGACTACCTGAGATCCTACCGCAGATTGAATTCTGCCATGAAGAAGGGCACAGAGGTCT
TCCAGAGTGAGAGTCAGAGGAAGCCACAAGTGTCCCCAGGAGATGTGGAAAGCTACAAAGACAAAGATAC
AGAGGAGCCAGACCAACCCTCCCCAAGCTTGCTCAGGGAGAAAGGACTGGATCTTGCAACCTGTGATGGT
GGAGACTGCCCTGACCAGGATCCTGTTTCTGACAGTTCCAGGCACCTAGGCTGCTGGGCATGGCTTCAAA
GGGCTTTTGGCCAGAAGAAGAAGTGA

Translation (171 aa):
MDKAKKMMQSIPSFVKDTSDIEEHAVPSAQVLPAQSTRCSKSETLCFSKEQSHCSEDGWIANWDLYSFCV
FESVDYLRSYRRLNSAMKKGTEVFQSESQRKPQVSPGDVESYKDKDTEEPDQPSPSLLREKGLDLATCDG
GDCPDQDPVSDSSRHLGCWAWLQRAFGQKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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