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Report for CCDS8417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8417.1 Public Homo sapiens 11 NHERF4 24 110 108 CCDS HistoryNCBI Gene:79849Re-query CCDS DB by CCDS ID:8417.1Re-query CCDS DB by GeneID:79849See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322712.4 ENSP00000327107.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322712.4Link to Ensembl Protein Viewer:ENSP00000327107.4Re-query CCDS DB by Nucleotide ID:ENST00000322712Re-query CCDS DB by Protein ID:ENSP00000327107
Original member Current member NCBI NM_024791.4 NP_079067.3 Accepted alive Link to Nucleotide Sequence:NM_024791.4Link to Protein Sequence:NP_079067.3Re-query CCDS DB by Nucleotide ID:NM_024791Re-query CCDS DB by Protein ID:NP_079067Link to BLAST:NP_079067.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079067.3 491 Q86UT5-3 491 100% 0 0

Chromosomal Locations for CCDS 8417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119185495 119185510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119185925 119185952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119186092 119186165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119186479 119186690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119187270 119187459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119187564 119187658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119187940 119188144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119188355 119188551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119188640 119188867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119189005 119189205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119189463 119189492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGAGAAAGCCGCAGATCTGCAGGACACAGCCTCGTTAACTCTGAAGTTTAAGTTTAACCCAAAGCTGG
GCATTGATAATCCTGTCCTCTCCCTGGCCGAAGACCACGACCCCTATGATCCCTGGAGCCTGGAGCGGCC
TCGCTTCTGTTTACTGAGCAAAGAGGAGGGCAAGAGTTTTGGCTTCCACCTGCAGCAGGAGCTGGGCAGG
GCTGGGCATGTGGTGTGCAGGGTGGACCCAGGCACCTCTGCCCAGCGCCAGGGTCTTCAGGAAGGAGACA
GGATCCTGGCGGTGAACAATGATGTTGTGGAACACGAAGACTATGCGGTGGTGGTACGCCGCATCCGGGC
CAGCAGCCCTCGGGTGTTGCTGACAGTATTGGCACGGCATGCACATGACGTGGCCCGAGCTCAGCTGGGA
GAAGATGCCCACCTCTGTCCCACCCTAGGCCCAGGGGTCCGGCCCCGGCTGTGCCACATAGTGAAAGATG
AGGGTGGTTTTGGCTTCAGTGTCACCCATGGCAATCAGGGTCCTTTCTGGTTGGTGCTAAGTACTGGAGG
AGCAGCTGAGCGGGCAGGGGTGCCCCCCGGGGCCCGGCTGCTGGAAGTGAATGGGCTTTGGCAGAGTGGA
CAGCAGGTGACCTTGCTGGTGGCAGGGCCAGAGGTGGAAGAACAGTGTCGCCAGCTGGGATTGCCCCTGG
CTGCACCCCTGGCAGAGGGCTGGGCACTGCCCACCAAGCCCCGCTGCCTGCACCTGGAGAAAGGGCCCCA
GGGTTTTGGGTTCCTGCTCCGGGAGGAAAAGGGCCTTGACGGTCGCCCTGGACAGTTCCTGTGGGAGGTG
GACCCGGGACTGCCAGCCAAGAAGGCTGGGATGCAGGCTGGGGACCGGCTGGTGGCTGTGGCTGGGGAGA
GCGTGGAGGGGCTGGGCCATGAGGAGACAGTGTCCAGGATCCAGGGGCAGGGCTCCTGTGTCTCCCTCAC
TGTCGTCGACCCTGAGGCGGACCGCTTCTTCAGCATGGTTCGCCTGTCCCCACTCCTCTTCTTGGAGAAC
ACAGAGGCTCCCGCCTCGCCCCGGGGCAGCAGCTCAGCCTCACTGGTTGAGACAGAGGACCCTTCACTTG
AAGACACAAGCGTGCCTTCTGTCCCTCTTGGCTCCCGACAGTGCTTCCTGTACCCTGGGCCTGGTGGCAG
CTATGGCTTCCGACTCAGTTGTGTGGCCAGTGGGCCTCGTCTCTTCATCTCCCAGGTGACTCCAGGAGGC
TCAGCTGCCCGGGCTGGGCTGCAAGTGGGAGACGTGATTCTGGAAGTGAACGGGTATCCTGTTGGGGGAC
AGAATGACCTGGAGAGGCTTCAGCAGCTGCCTGAGGCTGAGCCACCCCTCTGCCTGAAGCTGGCAGCCAG
GTCTCTGCGGGGCTTGGAAGCCTGGATTCCCCCTGGGGCTGCAGAGGACTGGGCTCTGGCCTCGGATCTA
CTGTAG

Translation (491 aa):
MEKAADLQDTASLTLKFKFNPKLGIDNPVLSLAEDHDPYDPWSLERPRFCLLSKEEGKSFGFHLQQELGR
AGHVVCRVDPGTSAQRQGLQEGDRILAVNNDVVEHEDYAVVVRRIRASSPRVLLTVLARHAHDVARAQLG
EDAHLCPTLGPGVRPRLCHIVKDEGGFGFSVTHGNQGPFWLVLSTGGAAERAGVPPGARLLEVNGLWQSG
QQVTLLVAGPEVEEQCRQLGLPLAAPLAEGWALPTKPRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEV
DPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADRFFSMVRLSPLLFLEN
TEAPASPRGSSSASLVETEDPSLEDTSVPSVPLGSRQCFLYPGPGGSYGFRLSCVASGPRLFISQVTPGG
SAARAGLQVGDVILEVNGYPVGGQNDLERLQQLPEAEPPLCLKLAARSLRGLEAWIPPGAAEDWALASDL
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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