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Report for CCDS84175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84175.1 Public Mus musculus 15 1110038F14Rik 23 108 98 CCDS HistoryNCBI Gene:117171Re-query CCDS DB by CCDS ID:84175.1Re-query CCDS DB by GeneID:117171See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071792.6 ENSMUSP00000071698.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071792.6Link to Ensembl Protein Viewer:ENSMUSP00000071698.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071792Re-query CCDS DB by Protein ID:ENSMUSP00000071698
Original member Current member NCBI NM_001347540.1 NP_001334469.1 Accepted alive Link to Nucleotide Sequence:NM_001347540.1Link to Protein Sequence:NP_001334469.1Re-query CCDS DB by Nucleotide ID:NM_001347540Re-query CCDS DB by Protein ID:NP_001334469Link to BLAST:NP_001334469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334469.1 222 Q3U6N9-1 222 100% 0 0

Chromosomal Locations for CCDS 84175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76948539 76948544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76948629 76948919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76949068 76949152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76949544 76949690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76950249 76950388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGCGGAGCCAGGGCGTCCTGCTCGGGAGGCACCAGCAGCCTCAAGTCGGAAAACTCATCGCGCTCCGC
GCAGACCCCGGCCCTCTCGCTCAGCTTCCGGTGCCTCGGAACCTCCTCTCCGCAGTTCAGTGCAACCTGC
ATGCGACTCCGCCGCCGGAACCCATCCCGTAGGCAACACAGTAGCGATGAAGCAAAAGAAAAAGAAAACC
CCCAACAGGGTCTCTGGGACAAATGGAAGCGAAAAGCCCTCGGAGAAACCTGCCCCGGACGAAGCTCCTC
CTAGCGCTGAGGCCCAGGCGGAACAGCTGGCGCGGGAGCTGGCCTGGTGTGTGGAACAGCTGGAGCTGGG
TCTCAAGACGCAGAGACCTACCCCGAAGCAGAAAGAGCAGGCTGTTGGGGCAATCCGAACGCTGCGCAGT
GAAAAAACCCCCTTGCCCCGGAAGAGACAGCTGATGCGCTCCTTGTTTGGGGACTACAGGGCTCAGATGG
ATGCAGAGTGGCGGGAGGCCCTACGGGCTCTAAAGGCTGCCACCCATTCGGCCCAGGTACAGCTCGTCAG
TGAGGCCACCAGAAAGAAGAGCGGAAGGGTCTGCAGGCCTCGTCCTGCAGAAAGAGCCAAAACCACTCCG
GACTTGACCAGCGAAGAGTTTCGGTTCAATTTCTTTTAG

Translation (222 aa):
MAEPGRPAREAPAASSRKTHRAPRRPRPSRSASGASEPPLRSSVQPACDSAAGTHPVGNTVAMKQKKKKT
PNRVSGTNGSEKPSEKPAPDEAPPSAEAQAEQLARELAWCVEQLELGLKTQRPTPKQKEQAVGAIRTLRS
EKTPLPRKRQLMRSLFGDYRAQMDAEWREALRALKAATHSAQVQLVSEATRKKSGRVCRPRPAERAKTTP
DLTSEEFRFNFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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