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Report for CCDS84275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84275.1 Public Mus musculus 17 1700010I14Rik 23 108 98 CCDS HistoryNCBI Gene:66931Re-query CCDS DB by CCDS ID:84275.1Re-query CCDS DB by GeneID:66931See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024650.11 ENSMUSP00000024650.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024650.11Link to Ensembl Protein Viewer:ENSMUSP00000024650.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024650Re-query CCDS DB by Protein ID:ENSMUSP00000024650
Original member Current member NCBI NM_001347544.1 NP_001334473.1 Accepted alive Link to Nucleotide Sequence:NM_001347544.1Link to Protein Sequence:NP_001334473.1Re-query CCDS DB by Nucleotide ID:NM_001347544Re-query CCDS DB by Protein ID:NP_001334473Link to BLAST:NP_001334473.1

Chromosomal Locations for CCDS 84275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8988397 8988421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8992046 8992752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8993596 8993718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8995198 8995257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8996979 8997103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9001128 9001186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9001770 9001945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9005192 9005245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9005693 9005754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9008006 9008213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGCTGAGGATCAGGAACCTGACTTTTACCTAAAGTGGAAGCACTGTGAGAAACCGGGTGTTAAGACTC
TAAGCAACTTAAGGAAACTCCTGTCCCAACTCCAGGAGGACCACAGGAAGGACATCAGTGTGTACATTTC
AGGACACCTGAACCCCAGGAAGCTCTACAAGCCACCTGAGACCATTTTCCAGCACTGGCGCAATTCCAAC
AGGACATGGGAGAAACCCACCCACTCCACACCCACCATCCCCCCGGCCTCCAGAAACAAAGAAGTATCAG
AGATGAAGGACGCTTGGGTTCACTTTACAGTGAGCACAGCCCTGCATCCCGATGACACACACAACACGCC
ACTGTTCAGGTACCTGAACCCACGCGTACAGGCCTCCCGTGCTCTCAAAGATGGTGCCTCCGCGGCTCTG
CAGGAGGAGGAGAAGGAACTGAAGGAAAGACTTGCATTTTCTCGGGAAAAACACATGAAGGAAGAACTCA
GGCTGCCTGAGATGAAAGTGCTCAGATACCCAGAGGTGGTATCCAGCCGCCAGTGCTCCAGGTCTGCCCC
AGGCAGGGATGTGTACCGTTACATCAGCCCCTACCTAGCTGGTATAACGAAAGCCGACAGCTACAAGAAG
TTCCTGAGTTTCCAAAGAGAAGTGCTGGCAAAGGAAGAAACCCTGAAGTATGACTTCACGGGGAGCAAGG
TGGCTGTGGCCCATGAGAACAGACTGAAGGAGGAGCTCCAGAAGATATGCACCTGCAACCCTCAGCAGTT
CAACAGGTTGCAGGTCTTTGGGGAAATCTTTGAGGATATTTGCAACAGCTCTTTGATCTTTGGGGATCTA
CTGAAAGAGATTAAGGATGAATATGAACTCTACATGGCAGCTCTCCTGGACTCACAGCCCACAGCGCAGT
ATCAGCGGCTCTTGGCTGAAGTCAGGGGGTTGGAGAACAGCCCCAGGCCCAGCTGTGACATTGACCAAGC
CAAGGAGCACCTGAGGAAGGTCCAGCAGGCTTATCTAGAAGCCTTGGAGCACAACGACAAACTCAGGAAT
GAGCTGGAGGCTGAGAGCTTATTGCTGCAGTCTGCTAAGGAAAAAGCAGCTAATGGGAAAATGAAGGATG
AGAAGGAACTGACTCTGGTCGAAAAGGTGGAGAAGAGGAGGTGTGAAATCTTTGAGAAATTGGATGAGAT
TAAAGCGCTTGAGAAACACATCAAAGAAAACATGGTGCACTCGGGAGTATTTAAGATCGCAGAGAGTGGC
CTTAAAAGCATAGAGGATGAAGCCATAAAGTTGGAAACATCAAACAGAATCTTAAAGAAGAAAATAAAAG
TGATTGAAAGCCAGATGAAGCAGCTCTTACTAAGGAGTAAGATCAGCGAGGAGGAAAGGCAACGAACATC
TGGATCGGCGATGGAGATGCTGCTTCTTATCATCTGTCCCACTGGAGCGTCAGTGTGGAACGTGCTCCAT
CCTCGGCTTGTTGATCGATGTGTCCTCCAGGTGACTCCTTCCACTTTATATGTGTATACATATACTTTAT
ATGCAGTTCATCTTTTATTCTGTAACTTTGAACTGGACAAAACAGGTTTAAATATTTAA

Translation (532 aa):
MAEDQEPDFYLKWKHCEKPGVKTLSNLRKLLSQLQEDHRKDISVYISGHLNPRKLYKPPETIFQHWRNSN
RTWEKPTHSTPTIPPASRNKEVSEMKDAWVHFTVSTALHPDDTHNTPLFRYLNPRVQASRALKDGASAAL
QEEEKELKERLAFSREKHMKEELRLPEMKVLRYPEVVSSRQCSRSAPGRDVYRYISPYLAGITKADSYKK
FLSFQREVLAKEETLKYDFTGSKVAVAHENRLKEELQKICTCNPQQFNRLQVFGEIFEDICNSSLIFGDL
LKEIKDEYELYMAALLDSQPTAQYQRLLAEVRGLENSPRPSCDIDQAKEHLRKVQQAYLEALEHNDKLRN
ELEAESLLLQSAKEKAANGKMKDEKELTLVEKVEKRRCEIFEKLDEIKALEKHIKENMVHSGVFKIAESG
LKSIEDEAIKLETSNRILKKKIKVIESQMKQLLLRSKISEEERQRTSGSAMEMLLLIICPTGASVWNVLH
PRLVDRCVLQVTPSTLYVYTYTLYAVHLLFCNFELDKTGLNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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