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Report for CCDS84332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84332.1 Public Mus musculus 17 Dlgap1 23 108 98 CCDS HistoryNCBI Gene:224997Re-query CCDS DB by CCDS ID:84332.1Re-query CCDS DB by GeneID:224997See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060072.11 ENSMUSP00000052858.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060072.11Link to Ensembl Protein Viewer:ENSMUSP00000052858.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060072Re-query CCDS DB by Protein ID:ENSMUSP00000052858
Original member Current member EBI ENSMUST00000133983.7 ENSMUSP00000116716.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133983.7Link to Ensembl Protein Viewer:ENSMUSP00000116716.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133983Re-query CCDS DB by Protein ID:ENSMUSP00000116716
Original member Current member NCBI NM_001347412.1 NP_001334341.1 Accepted alive Link to Nucleotide Sequence:NM_001347412.1Link to Protein Sequence:NP_001334341.1Re-query CCDS DB by Nucleotide ID:NM_001347412Re-query CCDS DB by Protein ID:NP_001334341Link to BLAST:NP_001334341.1
Original member Current member NCBI NM_001360665.1 NP_001347594.1 Accepted alive Link to Nucleotide Sequence:NM_001360665.1Link to Protein Sequence:NP_001347594.1Re-query CCDS DB by Nucleotide ID:NM_001360665Re-query CCDS DB by Protein ID:NP_001347594Link to BLAST:NP_001347594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334341.1 982 Q9D415-2 982 100% 0 0
NP_001347594.1 982 Q9D415-2 982 100% 0 0

Chromosomal Locations for CCDS 84332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70516022 70516996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70593167 70593381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70657454 70657631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70662569 70662809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70761075 70761445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70765998 70766089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70786788 70787209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70809188 70809279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70815194 70815346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70818025 70818234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2949 nt):
ATGAAAGGGTTATCGGGTAGCCGCAGCCACCACCATGGGATCACCTGCGAGGCGGCCTGTGACTCCTTGT
CACACCACTCAGACCACAAGCCGTACCTGCTGAGCCCCGTAGACCACCACCCTGCGGACCATCCCTACTA
CACCCAGCGGAATTCTTTCCAGGCCGAGTGCGTAGGGCCCTTCAGCGACCCGCTGGCCAGCAGCACCTTC
CCGCGCAGGCACTACACCTCGCAGCAGGAGCTGAAGGACGAGAGTGCCCTGGTACCACGCACCCTGGCCA
CCAAGGCGAATCGTCTCCCCACCAACCTGCTGGATCAGTTTGAGAGGCAGCTGCCCCTCAGCCGGGATGG
CTATCACACGCTACAGTACAAGCGCACCGCTGTGGAGCATCGCAGCGATAGCCCCGGCCGCATCCGGCAC
CTGGTCCACTCGGTCCAGAAGCTCTTTACTAAGTCTCATTCCCTGGAGGGGCCATCCAAAGGCAGCGTCA
ACGGGGGCAAGGCTAGCCCTGACGAGTCGCAAACTCTGAGATATGGCAAGCGCAGCAAGAGCAAGGAGAG
GCGATCAGAATCCAAGGCTAGATCCAATGCTTCTAACGCCTCCCCCACCTCTCCCAGTTGGTGGAGTTCA
GATGACAACCTGGATGGTGACATGTGCCTCTACCACACGCCCTCGGGTGTGATGACCATGGGCAGGTGTC
CTGACCGCTCCGCTTCGCAGTACTTCATGGAAGCCTACAACACCATCAGCGAGCAGGCAGTGAAGGCTTC
CCGGAGTAACAATGACATCAAGTGCTCCACCTGTGCCAACCTGCCAGTCACGCTGGATGCCCCGCTTCTG
AAGAAGAGTGCCTGGTCCTCCACTCTCACCGTGAGCAGAGCCCGAGAGGTTTATCAGAAAGCCTCGGTGA
ACATGGATCAGGCCATGGTGAAGTCCGAAGCTTGTCAACAAGAGCGGTCCTGCCAGTACTTACAGGTTCC
CCAGGATGAATGGTCAGGGTACACACCTCGCGGGAAAGACGACGAGATCCCGTGCCGGAGGATGCGCAGT
GGTAGCTACATCAAAGCCATGGGGGATGAAGACAGTGGGGACTCGGACACGAGCCCCAAGCCGTCTCCCA
AGGTGGCTGCAAGAAGAGAAAGCTATCTCAAGGCCACGCAGCCGTCCCTTACAGAGCTCACCACTCTCAA
GATCTCCAATGAACACTCCCCCAAACTCCAGATCCGGAGTCACAGCTACCTGAGGGCCGTAAGTGAAGTC
TCCATCAACAGAAGCCTGGACAGCCTGGACCCTGCAGGCTTGCTCACGTCACCAAAGTTCCGCTCCAGAA
ACGAGAGCTACATGCGCGCCATGAGCACCATAAGTCAGGTGAGCGAGATGGAGGTGAACGGCCAGTTCGA
ATCCGTGTGCGAGTCTGTGTTCAGCGAGCTGGAGTCGCAGGCGGTGGAAGCGCTGGACCTGCCCCTGCCT
GGCTGCTTCCGCATGCGGAGCCACAGCTATGTGCGGGCCATCGAAAAGGGCTGCTCCCAGGACGACGAAT
GCGTGTCGCTGCGGTCGTCCTCCCCTCCACGCACAACCACCACCGTGAGGACCATCCAGAGCAGCACCGT
GTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAACTACCACGAAACCTTTC
ATTTCTATCACAGCCCAGAGTAGCACAGAGTCTGCGCAGGATGCCTACATGGACGGGCAAGGCCAGCGCG
GAGACATGATCAGCCAGTCTGGCCTCAGCAACTCCACCGAAAGTCTGGACAGTATGAAGGCTCTCACGGC
TGCCATCGAGGCTGCAAACGCCCAGATTCACGGCCCAGCAAGTCAACATATGGGCAGCAATGCTGCTGCT
GTCACCACCACCACCACCATAGCCACTGTCACCACCGAGGATAGGAAGAAAGACTTTAAGAAAAACCGAT
GTCTGTCTATTGGGATACAGGTGGACGATGCCGAAGAGCCGGAGAAAATGGCAGAGAGTAAGACGTCCAA
TAAGTTCCAGTCCGTGGGAGTGCAAGTAGAAGAAGAGAAGTGCTTCCGCAGGTTCACTCGGTCCAACAGT
GTGACAACTGCAGTACAGGCCGACCTGGACTTCCATGATAATCTGGAAAATTCTCTGGAGTCTATAGAGG
ACAATTCGTGTCCTGGCCCCATGGCCAGACAGTTCTCGCGGGACGCCAGCACCTCTACCGTCAGTATCCA
GGGTTCAGGAAACCACTATCATGCCTGTGCAGCCGATGACGACTTTGACACGGATTTTGACCCCTCTATC
CTGCCTCCTCCGGACCCCTGGATTGACTCTATCACAGAAGACCCTCTGGAGGCCGTTCAAAGGTCCGTGT
GCCACCGGGACGGCCACTGGTTCCTGAAGCTTCTCCAGGCAGAGCGGGACCGCATGGAAGGGTGGTGCAA
GCTAATGGAGAGAGAAGAGAGGGAGAACAACCTCCCAGAAGACATTCTAGGGAAAATCCGAACCGCGGTG
GGCAGTGCCCAACTTCTCATGGCGCAGAAATTCTACCAGTTCAGAGAACTGTGTGAAGAGAACCTGAATC
CCAATGCTCACCCGAGACCCACTTCCCAGGACTTGGCGGGGTTTTGGGACATGCTGCAGTTGTCCATAGA
GAATATTAGTATGAAATTTGATGAACTTCATCAGCTAAAGGCCAATAATTGGAAACAGATGGATCCTCTT
GACAAGAAGGAGCGAAGGGCCCCTCCTCCAGTGCCAAAGAAGCCGGCGAAGGGCCCCGCGCCGCTGATCC
GGGAGCGCTCGCTGGAGAGCTCGCAGCGCCAGGAGGCCCGCAAGCGCCTGATGGCCGCCAAGCGCGCCGC
GTCGGTCCGCCAGAACTCGGCCACCGAGAGCGCCGAGAGCATCGAGATCTACATCCCCGAGGCGCAGACC
CGGCTCTGA

Translation (982 aa):
MKGLSGSRSHHHGITCEAACDSLSHHSDHKPYLLSPVDHHPADHPYYTQRNSFQAECVGPFSDPLASSTF
PRRHYTSQQELKDESALVPRTLATKANRLPTNLLDQFERQLPLSRDGYHTLQYKRTAVEHRSDSPGRIRH
LVHSVQKLFTKSHSLEGPSKGSVNGGKASPDESQTLRYGKRSKSKERRSESKARSNASNASPTSPSWWSS
DDNLDGDMCLYHTPSGVMTMGRCPDRSASQYFMEAYNTISEQAVKASRSNNDIKCSTCANLPVTLDAPLL
KKSAWSSTLTVSRAREVYQKASVNMDQAMVKSEACQQERSCQYLQVPQDEWSGYTPRGKDDEIPCRRMRS
GSYIKAMGDEDSGDSDTSPKPSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEV
SINRSLDSLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALDLPLP
GCFRMRSHSYVRAIEKGCSQDDECVSLRSSSPPRTTTTVRTIQSSTVSSCITTYKKTPPPVPPRTTTKPF
ISITAQSSTESAQDAYMDGQGQRGDMISQSGLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGSNAAA
VTTTTTIATVTTEDRKKDFKKNRCLSIGIQVDDAEEPEKMAESKTSNKFQSVGVQVEEEKCFRRFTRSNS
VTTAVQADLDFHDNLENSLESIEDNSCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSI
LPPPDPWIDSITEDPLEAVQRSVCHRDGHWFLKLLQAERDRMEGWCKLMEREERENNLPEDILGKIRTAV
GSAQLLMAQKFYQFRELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPL
DKKERRAPPPVPKKPAKGPAPLIRERSLESSQRQEARKRLMAAKRAASVRQNSATESAESIEIYIPEAQT
RL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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