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Report for CCDS84479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84479.1 Public Mus musculus 2 Abi1 23 108 98 CCDS HistoryNCBI Gene:11308Re-query CCDS DB by CCDS ID:84479.1Re-query CCDS DB by GeneID:11308See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093171.12 ENSMUSP00000090860.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093171.12Link to Ensembl Protein Viewer:ENSMUSP00000090860.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093171Re-query CCDS DB by Protein ID:ENSMUSP00000090860
Original member NCBI NM_001331045.1 NP_001317974.1 Updated not alive Link to Nucleotide Sequence:NM_001331045.1Link to Protein Sequence:NP_001317974.1Re-query CCDS DB by Nucleotide ID:NM_001331045Re-query CCDS DB by Protein ID:NP_001317974
Current member NCBI NM_001331045.2 NP_001317974.1 Accepted alive Link to Nucleotide Sequence:NM_001331045.2Link to Protein Sequence:NP_001317974.1Re-query CCDS DB by Nucleotide ID:NM_001331045Re-query CCDS DB by Protein ID:NP_001317974Link to BLAST:NP_001317974.1

Chromosomal Locations for CCDS 84479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 22941872 22942047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22946576 22946761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22953435 22953608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22957018 22957118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22960707 22960847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22962401 22962501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22963214 22963228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22971083 22971259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 22994523 22994690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23039949 23040065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGATAGAGAGTTACC
AGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTATATACAGGCTACAGACAAGAGAAAAGCTCT
AGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGCTTATCAAATAAATGCATTGGCCAAC
AATGTGCTCCAGCTGCTGGATATCCAAGCATCTCAGCTGCGGAGGATGGAGTCATCCATCAATCACATCT
CACAGACTGTGGATATTCATAAAGAAAAAGTGGCTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAA
TACATCAAGAACTCACAAAATAATCGCACCCGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCT
ATCGACTATACAGTTCTGGATGATGTGGGCCATGGAGTTAAGTGGCTAAAAGCCAAGCACGGAAATAACC
AGCCTGCAAGAACTGGCACATTGTCGAGAACAAACCCTCCCACGCAGAAACCACCAAGCCCTCCCGTGTC
GGGCCGAGGGACTTTGGGACGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCAACAGTTCCC
AATGACTACATGACTAGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACAGCTTCTTTAAATC
AGAGACCAAGGACGCATAGTGGAAGTAGTGGAGGAAGCGGAAGCCGAGAGAACAGTGGGAGCAGCAGCAT
TGGCATTCCTATTGCTGTGCCTACGCCCTCACCGCCCACTGCGGGCCCAGCCCCTGGCGCAGCTCCTGGT
TCCCAGTATGGCACAATGACCAGGCAGATTTCTCGACACAACTCTACCACTTCTTCGACATCTTCTGGTG
GATATAGACGAACTCCTTCTGTGGCCGCCCAATTCTCTGCTCAGCCTCATGTTAATGGAGGTCCACTTTA
TTCTCAAAATTCAATTGCTGATAGCCCAACTCCACCACCACCCCCTCCACCAGATGACATTCCCATGTTT
GATGACTCTCCGCCTCCTCCGCCACCTCCTCCTGTGGACTATGAAGATGAGGAAGCTGCAGTAGTTCAGT
ATAGTGACCCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAAT
ATATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTTATAAAG
AAGAATGATGATGGCTGGTTTGAAGGAGTTTGCAATCGAGTGACTGGACTCTTCCCTGGGAACTATGTTG
AATCAATCATGCACTATACTGATTAG

Translation (451 aa):
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQINALAN
NVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKP
IDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTPYKTLEPVKPPTVP
NDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTAGPAPGAAPG
SQYGTMTRQISRHNSTTSSTSSGGYRRTPSVAAQFSAQPHVNGGPLYSQNSIADSPTPPPPPPPDDIPMF
DDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVIK
KNDDGWFEGVCNRVTGLFPGNYVESIMHYTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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