NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84535.1 Public Mus musculus 2 Gad1 23 108 98 CCDS HistoryNCBI Gene:14415Re-query CCDS DB by CCDS ID:84535.1Re-query CCDS DB by GeneID:14415See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130604.7 ENSMUSP00000117721.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130604.7Link to Ensembl Protein Viewer:ENSMUSP00000117721.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130604Re-query CCDS DB by Protein ID:ENSMUSP00000117721
Original member Current member EBI ENSMUST00000130998.7 ENSMUSP00000119379.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130998.7Link to Ensembl Protein Viewer:ENSMUSP00000119379.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130998Re-query CCDS DB by Protein ID:ENSMUSP00000119379
Original member Current member EBI ENSMUST00000148210.7 ENSMUSP00000119733.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148210.7Link to Ensembl Protein Viewer:ENSMUSP00000119733.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148210Re-query CCDS DB by Protein ID:ENSMUSP00000119733
Original member NCBI NM_001312900.1 NP_001299829.1 Updated not alive Link to Nucleotide Sequence:NM_001312900.1Link to Protein Sequence:NP_001299829.1Re-query CCDS DB by Nucleotide ID:NM_001312900Re-query CCDS DB by Protein ID:NP_001299829
Current member NCBI NM_001312900.2 NP_001299829.1 Accepted alive Link to Nucleotide Sequence:NM_001312900.2Link to Protein Sequence:NP_001299829.1Re-query CCDS DB by Nucleotide ID:NM_001312900Re-query CCDS DB by Protein ID:NP_001299829Link to BLAST:NP_001299829.1

Chromosomal Locations for CCDS 84535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 70563832 70563910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70567186 70567248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70572706 70572864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70574069 70574311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70579111 70579201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70584420 70584456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCATCTTCCACTCCTTCGCCTGCAACCTCCTCGAACGCGGGAGCGGATCCTAATACTACCAACCTGC
GCCCTACAACGTATGATACTTGGTGTGGCGTAGCCCATGGATGCACCAGAAAACTGGGCCTGAAGATCTG
TGGCTTCTTACAAAGGACCAATAGCCTGGAAGAGAAGAGTCGTCTTGTGAGCGCCTTCAGGGAGAGGCAG
TCCTCCAAGAACCTGCTTTCCTGTGAAAACAGTGACCAGGGTGCCCGCTTCCGGCGCACAGAGACCGACT
TCTCCAACCTGTTTGCTCAAGATCTGCTTCCAGCTAAGAACGGGGAGGAGCAAACTGCGCAGTTCTTGCT
GGAAGTGGTAGACATACTCCTCAACTATGTCCGCAAGACATTTGATCGCTCCACCAAGGTTCTGGATTTC
CACCACCCACACCAGTTGCTGGAAGGCATGGAAGGCTTTAATTTGGAGCTGTCTGACCACCCCGAGTCTC
TGGAGCAGATCCTGGTTGACTGTAGAGACACCCTGAAGTACGGGGTTCGCACAGGTCACCCTCGATTTTT
CAACCAGCTCTCTACTGGTTTGGATATCATTGGTTTAGCTGGTGAATGGCTGACATCGACTGCCAATACC
AATATGCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGA

Translation (223 aa):
MASSTPSPATSSNAGADPNTTNLRPTTYDTWCGVAHGCTRKLGLKICGFLQRTNSLEEKSRLVSAFRERQ
SSKNLLSCENSDQGARFRRTETDFSNLFAQDLLPAKNGEEQTAQFLLEVVDILLNYVRKTFDRSTKVLDF
HHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANT
NMPSDMRECWLLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH