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Report for CCDS84586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84586.1 Public Mus musculus 2 Slc9a8 23 108 98 CCDS HistoryNCBI Gene:77031Re-query CCDS DB by CCDS ID:84586.1Re-query CCDS DB by GeneID:77031See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109218.6 ENSMUSP00000104841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109218.6Link to Ensembl Protein Viewer:ENSMUSP00000104841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109218Re-query CCDS DB by Protein ID:ENSMUSP00000104841
Original member Current member NCBI NM_001304542.1 NP_001291471.1 Accepted alive Link to Nucleotide Sequence:NM_001304542.1Link to Protein Sequence:NP_001291471.1Re-query CCDS DB by Nucleotide ID:NM_001304542Re-query CCDS DB by Protein ID:NP_001291471Link to BLAST:NP_001291471.1

Chromosomal Locations for CCDS 84586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167421752 167421765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167424119 167424297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167441129 167441187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167443449 167443532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167445506 167445607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167446502 167446536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167451207 167451350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167457327 167457465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167459661 167459754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167465341 167465457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167467685 167467767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167468964 167469075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167471382 167471602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167473434 167473580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167474028 167474135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGCGGAGGAGGAGTTCTCCAACACAACCCATGAGACCTTCAACTTCACCCTTCACACCACCTTGGGTG
TCACCACGAAGCTGGTGCTGCCGACACCTGCCAAGCCTATCCTTCCGGTGCAGACGGGAGAGCAGGCCCA
GCAGGAGGAGCAGTCGAGCGGCATGACCATTTTCTTCAGCCTCCTCGTCCTAGGTATTCTCATGGGAGCA
GTAATAAAAGTTATAGAGTTTAAAAAGCTGGCAAATTGGAAGGAGGAAGAAATGTTTCGCCCCAACATGT
TTTTCCTTCTCTTGCTCCCACCTATTATCTTTGAGTCAGGATACTCACTGCACAAGGGGAACTTCTTTCA
GAACATCGGTTCCATCACTCTCTTCGCTGTCTTTGGAACGGCAATCTCGGCTTTTGTAGTAGGTGGAGGA
ATTTACTTTCTGGGTCAGGCTGATGTAATCTCTAAACTCAACATGACAGACAGTTTCGCATTTGGCTCCC
TGATATCTGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTGGACCCTGTGCTCAA
CATGCTGGTGTTTGGAGAAAGCATTCTCAACGATGCAGTCTCCATCGTCCTCACCAACACGGCTGAAGGT
CTAACAAGAAAACATATGTCAGATGTCAGTGGGTGGCAAACGTTCTCACAGGCCCTTGGCTACTTCCTCA
AAATGTTCTTTGGCTCCGCAGCACTTGGCACGCTGACTGGCTTGATTTCAGCATTAATTGACCTGAGGAA
AACGCCTTCCCTGGAGTTTGGCATGATGATCATTTTTGCTTACCTGCCATATGGGCTGGCAGAAGGAATC
TCACTCTCAGGCATCATGGCGATCCTGTTTTCTGGCATCGTGATGTCACACTATACACACCATAACCTCT
CCCCAGTCACCCAGATCCTCATGCAGCAGACTCTCCGAACTGTGGCCTTCCTGTGTGAAACGTGTGTGTT
TGCATTTCTTGGCCTCTCCATTTTTAGTTTCCCTCACAAGTTTGAAATTTCCTTTGTCATCTGGTGCATA
GTGCTGGTCCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGTCCTACCTGCTGAACTTCTTCCGAGATC
ACAAAATCACCCCCAAGATGATGTTCATCATGTGGTTCAGTGGTCTTCGAGGGGCCATCCCCTATGCACT
AAGCCTGCACCTGGGCCTGGAGCCCATGGAGAAGCGTCAGCTCATCGGCACCACCACCATCGTCATCGTG
CTCTTCACCATCCTGCTGCTGGGCGGCAGCACCATGCCCCTCATCCGCCTCGTGGACATCGAGGATGCCC
GGGCTCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAGAAGATGGGTAATGCCATCGAGTC
AGAGCACCTGTCAGAGCTCACTGAAGAAGAGTACGAAGCTCACTACATCAGACAGCAGGACCTCAAAGGC
TTCATGTGGCTGGATGCCAAGTACCTGAACCCCTTCTTCACACGGCGGCTGACACAGGAGGACCTCCACC
ATGGCCGCATCCAGATGAAGAGCCTCACCAATAAGTGGTATGAGGAGGTCCGTCAGGGACCGTCAGGCTC
TGAGGATGATGAGCAGGAGTTGTTCTGA

Translation (545 aa):
MAEEEFSNTTHETFNFTLHTTLGVTTKLVLPTPAKPILPVQTGEQAQQEEQSSGMTIFFSLLVLGILMGA
VIKVIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGG
IYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEG
LTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALIDLRKTPSLEFGMMIIFAYLPYGLAEGI
SLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCI
VLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAIPYALSLHLGLEPMEKRQLIGTTTIVIV
LFTILLLGGSTMPLIRLVDIEDARARRRSKKDVNLSKTEKMGNAIESEHLSELTEEEYEAHYIRQQDLKG
FMWLDAKYLNPFFTRRLTQEDLHHGRIQMKSLTNKWYEEVRQGPSGSEDDEQELF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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