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Report for CCDS8471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8471.1 Public Homo sapiens 11 FOXRED1 24 110 108 CCDS HistoryNCBI Gene:55572Re-query CCDS DB by CCDS ID:8471.1Re-query CCDS DB by GeneID:55572See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263578.10 ENSP00000263578.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263578.10Link to Ensembl Protein Viewer:ENSP00000263578.5Re-query CCDS DB by Nucleotide ID:ENST00000263578Re-query CCDS DB by Protein ID:ENSP00000263578
Original member Current member NCBI NM_017547.4 NP_060017.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017547.4Link to Protein Sequence:NP_060017.1Re-query CCDS DB by Nucleotide ID:NM_017547Re-query CCDS DB by Protein ID:NP_060017Link to BLAST:NP_060017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060017.1 486 Q96CU9-1 486 100% 0 0

Chromosomal Locations for CCDS 8471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 126269207 126269291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126271437 126271657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126272969 126273079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126273336 126273454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126274927 126275021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126275327 126275428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126275794 126275870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126276059 126276219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126276394 126276523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126277071 126277175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126277435 126277689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGATTCGGAGGGTTCTGCCGCACGGCATGGGCCGGGGCCTCTTGACCCGGAGGCCAGGCACGCGCAGAG
GAGGCTTTTCTCTGGACTGGGATGGAAAGGTGTCTGAGATTAAGAAGAAGATCAAGTCGATCCTGCCTGG
AAGGTCCTGTGATCTACTGCAAGACACCAGCCACCTGCCTCCCGAGCACTCGGATGTGGTGATCGTGGGA
GGTGGGGTGCTTGGCTTGTCTGTGGCCTATTGGCTGAAGAAGCTGGAGAGCAGACGAGGTGCTATTCGAG
TGCTAGTGGTGGAACGGGACCACACGTATTCACAGGCCTCCACTGGGCTCTCAGTAGGTGGGATTTGTCA
GCAGTTCTCATTGCCTGAGAACATCCAGCTCTCCCTCTTTTCAGCCAGCTTTCTACGGAACATCAATGAG
TACCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCAACCCCTCGGGCTACCTCTTGCTGGCTT
CAGAAAAGGATGCTGCAGCCATGGAGAGCAACGTGAAAGTGCAGAGGCAGGAGGGAGCCAAAGTTTCTCT
GATGTCTCCTGATCAGCTTCGGAACAAGTTTCCCTGGATAAACACAGAGGGAGTGGCTTTGGCGTCTTAT
GGGATGGAGGACGAAGGTTGGTTTGACCCCTGGTGTCTGCTCCAGGGGCTTCGGCGAAAGGTCCAGTCCT
TGGGAGTCCTTTTCTGCCAGGGAGAGGTGACACGTTTTGTCTCTTCATCTCAACGCATGTTGACCACAGA
TGACAAAGCGGTGGTCTTGAAAAGGATCCATGAAGTCCATGTGAAGATGGACCGCAGCCTGGAGTACCAG
CCTGTGGAATGCGCCATTGTGATCAACGCAGCCGGAGCCTGGTCTGCGCAAATCGCAGCACTGGCTGGTG
TTGGAGAGGGGCCGCCTGGCACCCTGCAGGGCACCAAGCTACCTGTGGAGCCGAGGAAAAGGTATGTGTA
TGTGTGGCACTGCCCCCAGGGACCAGGCCTAGAGACTCCGCTTGTTGCAGACACCAGTGGAGCCTATTTT
CGCCGGGAAGGATTAGGTAGCAACTACCTAGGTGGTCGTAGCCCCACTGAGCAGGAAGAACCGGACCCGG
CGAACCTGGAAGTGGACCATGATTTCTTCCAGGACAAGGTGTGGCCCCATTTGGCCCTGAGGGTCCCAGC
TTTTGAGACTCTGAAGGTTCAGAGCGCCTGGGCCGGCTATTACGACTACAACACCTTTGACCAGAATGGC
GTGGTGGGCCCCCACCCGCTAGTTGTCAACATGTACTTTGCTACTGGCTTCAGTGGTCACGGGCTCCAGC
AGGCCCCTGGCATTGGGCGAGCTGTAGCAGAGATGGTACTGAAGGGCAGGTTCCAGACCATCGACCTGAG
CCCCTTCCTCTTTACCCGCTTTTACTTGGGAGAGAAGATCCAGGAGAACAACATCATCTGA

Translation (486 aa):
MIRRVLPHGMGRGLLTRRPGTRRGGFSLDWDGKVSEIKKKIKSILPGRSCDLLQDTSHLPPEHSDVVIVG
GGVLGLSVAYWLKKLESRRGAIRVLVVERDHTYSQASTGLSVGGICQQFSLPENIQLSLFSASFLRNINE
YLAVVDAPPLDLRFNPSGYLLLASEKDAAAMESNVKVQRQEGAKVSLMSPDQLRNKFPWINTEGVALASY
GMEDEGWFDPWCLLQGLRRKVQSLGVLFCQGEVTRFVSSSQRMLTTDDKAVVLKRIHEVHVKMDRSLEYQ
PVECAIVINAAGAWSAQIAALAGVGEGPPGTLQGTKLPVEPRKRYVYVWHCPQGPGLETPLVADTSGAYF
RREGLGSNYLGGRSPTEQEEPDPANLEVDHDFFQDKVWPHLALRVPAFETLKVQSAWAGYYDYNTFDQNG
VVGPHPLVVNMYFATGFSGHGLQQAPGIGRAVAEMVLKGRFQTIDLSPFLFTRFYLGEKIQENNII


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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