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Report for CCDS84762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84762.1 Public Mus musculus 4 C8b 23 108 98 CCDS HistoryNCBI Gene:110382Re-query CCDS DB by CCDS ID:84762.1Re-query CCDS DB by GeneID:110382See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84762.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065072.6 ENSMUSP00000066940.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065072.6Link to Ensembl Protein Viewer:ENSMUSP00000066940.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000065072Re-query CCDS DB by Protein ID:ENSMUSP00000066940
Original member Current member NCBI NM_001316671.1 NP_001303600.1 Accepted alive Link to Nucleotide Sequence:NM_001316671.1Link to Protein Sequence:NP_001303600.1Re-query CCDS DB by Nucleotide ID:NM_001316671Re-query CCDS DB by Protein ID:NP_001303600Link to BLAST:NP_001303600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303600.1 523 Q8BH35-2 523 100% 0 0

Chromosomal Locations for CCDS 84762.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 104766398 104766486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104774279 104774435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104780579 104780720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104782890 104783031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104784399 104784531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104790475 104790715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104791795 104791923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104793228 104793391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104800335 104800488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104801338 104801406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104804009 104804160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAAGATAGGGGCTCAGGTTTGGAGGGCACTGGCAAAGTCGTGTCTCCTCTGTGCTACTCTGGGATGTC
TCCATTTCCCTGGTTCCAGAGGTGGGAAGCCCGATTTCTTTGAGACAAAGGCAGTCAATGGGAGCCTTGT
CAAGAGCAGACCAGTACGGAGTGTGGCGGAAGCCCCAGCACCTATTGACTGTGAGCTATCCACCTGGTCT
TCCTGGACTGCATGTGACCCCTGTCAGAAGAAAAGGTACAGACATACTTACTTGCTCCGGCCCTCTCAGT
TCTATGGGGAATTGTGTGACTTGTCCGACAAGGAAGTTGAAGACTGTGTTACCAACCAACCCTGCAGGAG
TCAAGTACGATGTGAAGGCTTTGTGTGTGCACAGACAGGGAGGTGTGTGAATCGCAGACTCCTTTGCAAT
GGGGACAATGACTGTGGAGACCAATCAGATGAAGCCAACTGTAGGAGGATTTATAAAAACTGTCAACGGG
AGATGGAGCAGTACTGGGCAATTGACAGGCTGGCCAGTGGGATAAATCTGTTCACAAACACTTTTGAGGG
CCCAGTTCTCGATCACCGGTATTATGCTGGTGGATGCTCCCCCCACTACATCCTGGACACCAACTTTAGG
AAGCCATACAACGTAGAAAGCTACACCCCACAGCAAAGCAAGTTCCTCCACGCGCGCTCTGTCCTTGAAG
TGGCACATTACAAGCTGAAGTCTAGAAGCCTCATGCTCCATTATGAATTCCTTCAGAGGGTCAAGAGCCT
GCCCCTGGAGTATAGCTATGGGGAATACCGAGATCTTCTTCGTGACTTCGGGACCCATTTCATCACTGAA
GCCGTACTTGGGGGCATCTACGAGTACACGCTTATCATGAACAAAGACGCCATGGAGCAAGGAGACTACA
CTCTTAGCCATGTTACTGCCTGTGCTGGAGGAAGTTTCGGTATTGGTGGTATGGTCTATAAAGTCTATGT
CAAAGTGGGCGTTTCCGCAAAGAAATGCAGTGACATTATGAAAGAAATCAACGAAAGAAATAAGAGGAGC
ACCATGGTAGAAGACTTGGTAGTTCTTGTGAGAGGAGGGACAAGTGAGGATATCACTGCCTTGGCATACA
AGGAGCTACCAACCCCTGAACTGATGGAGGCATGGGGCGATGCTGTGAAGTACAACCCAGCAATCATTAA
GATCAAGGCTGAGCCCCTGTATGAGCTTGTGACAGCCACAGACTTTGCATACTCCAGCACAGTGAAGCAG
AACTTAAAGAAGGCACTAGAAGAATTCCAGAGTGAGGTCAGCTCCTGCCGCTGTGCTCCTTGCAGAGGGA
ATGGAGTCCCTGTCCTGAAAGGATCCCGCTGTGAGTGCATCTGCCCCGGTGGCTTCCAAGGCACAGCCTG
TGAGGTTACCTATCGGAAAGACATCCCCATAGATGGGAAGTGGAGTTGCTGGTCTGACTGGTCTGCATGC
TCTGGAGGACACAAAACAAGACACAGGCAGTGCAACAATCCAGCCCCTCACAAAGGAGGCAGCCCCTGTT
CGGGTCCTGCTTCCGAAACACTCAACTGTTAA

Translation (523 aa):
MKIGAQVWRALAKSCLLCATLGCLHFPGSRGGKPDFFETKAVNGSLVKSRPVRSVAEAPAPIDCELSTWS
SWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCRSQVRCEGFVCAQTGRCVNRRLLCN
GDNDCGDQSDEANCRRIYKNCQREMEQYWAIDRLASGINLFTNTFEGPVLDHRYYAGGCSPHYILDTNFR
KPYNVESYTPQQSKFLHARSVLEVAHYKLKSRSLMLHYEFLQRVKSLPLEYSYGEYRDLLRDFGTHFITE
AVLGGIYEYTLIMNKDAMEQGDYTLSHVTACAGGSFGIGGMVYKVYVKVGVSAKKCSDIMKEINERNKRS
TMVEDLVVLVRGGTSEDITALAYKELPTPELMEAWGDAVKYNPAIIKIKAEPLYELVTATDFAYSSTVKQ
NLKKALEEFQSEVSSCRCAPCRGNGVPVLKGSRCECICPGGFQGTACEVTYRKDIPIDGKWSCWSDWSAC
SGGHKTRHRQCNNPAPHKGGSPCSGPASETLNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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