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Report for CCDS84837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84837.1 Public Mus musculus 4 Cdk11b 23 108 98 CCDS HistoryNCBI Gene:12537Re-query CCDS DB by CCDS ID:84837.1Re-query CCDS DB by GeneID:12537See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105598.1 ENSMUSP00000101223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105598.1Link to Ensembl Protein Viewer:ENSMUSP00000101223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105598Re-query CCDS DB by Protein ID:ENSMUSP00000101223
Original member NCBI NM_001347308.1 NP_001334237.1 Updated not alive Link to Nucleotide Sequence:NM_001347308.1Link to Protein Sequence:NP_001334237.1Re-query CCDS DB by Nucleotide ID:NM_001347308Re-query CCDS DB by Protein ID:NP_001334237
Current member NCBI NM_001347308.2 NP_001334237.1 Accepted alive Link to Nucleotide Sequence:NM_001347308.2Link to Protein Sequence:NP_001334237.1Re-query CCDS DB by Nucleotide ID:NM_001347308Re-query CCDS DB by Protein ID:NP_001334237Link to BLAST:NP_001334237.1
Original member NCBI NM_001355568.1 NP_001342497.1 Updated not alive Link to Nucleotide Sequence:NM_001355568.1Link to Protein Sequence:NP_001342497.1Re-query CCDS DB by Nucleotide ID:NM_001355568Re-query CCDS DB by Protein ID:NP_001342497
Current member NCBI NM_001355568.2 NP_001342497.1 Accepted alive Link to Nucleotide Sequence:NM_001355568.2Link to Protein Sequence:NP_001342497.1Re-query CCDS DB by Nucleotide ID:NM_001355568Re-query CCDS DB by Protein ID:NP_001342497Link to BLAST:NP_001342497.1

Chromosomal Locations for CCDS 84837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155625765 155625773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155626774 155626889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155628696 155628823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155630194 155630332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155634089 155634225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155638520 155638642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155639594 155639689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155639777 155639941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155640747 155640812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155641515 155641690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155642485 155642575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155647483 155647604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155647862 155647967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155648283 155648404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155648486 155648593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155648717 155648833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155649012 155649160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155649422 155649611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155649692 155649784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGTCACAGTCTGATGACCGCGATTCCAAAAGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACCGAA
TGGAGATCACAATCAGGAACTCACCATATAGAAGAGAGGATTCTATGGAAGACAGAGGAGAGGAGGATGA
TTCTCTGGCCATCAAACCACCCCAGCAAATGTCTCGGAAAGAAAAGGCTCATCACAGAAAAGACGAGAAA
AGAAAAGAGAAACGTCGACATCGTAGCCATTCAGCAGAGGGAGGGAAACATGCCAGAGTGAAAGAGAAAG
AAAGGGAGCACGAACGCCGGAAACGCCACCGAGAAGAACAAGATAAAGCTCGAAGGGAGTGGGAAAGACA
GAAGAGGAGGGAAATGGCGAGAGAACATTCCAGAAGAGAGAGGGACCGCCTGGAGCAGTTAGAAAGGAAG
AGGGAGCGGGAGCGCAAGCTGAGGGAGCAGCAGAAGGAGCAGCGGGAGCAGAAGGAGCGGGAACGGAGGG
CAGAGGAGCGCCGCAAAGAGAGAGAAGCGCGTAGGGAAGTCTCTGCACATCACCGTACCATGAGGGAGGA
GTACAGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAG
ATGGGAGACAACCGGAAGCCAGTAAAAGAAGAGAAGGTGGAAGAGAGAGACTTGTTGTCAGACCTCCAAG
ACATCAGTGACAGCGAGAGGAAAACCAGCTCAGCTGAGTCTTCATCAGCAGAATCAGGCTCAGGTTCTGA
AGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGGGAGCACCAGTGAAGAATCAGAGGAAGAA
GAGGAAGAAGAAGAGGAGGAGGAAGAAGAGGAGACTGGGAGCAACTCTGAGGAGGCCTCTGAACAGTCCG
CAGAAGAAGTCAGTGATGAGGAAATGAGTGAAGATGAAGACAGAGAAAACGAGAACCACATCTTGGTTGT
TCCAGAGTCACGATTTGACCGAGATTCTGGGGACAGTGAAGAAGGGGAGGAAGAAGTTGGTGAAGGGACT
CCACAGAGCAGTGCCCCCACCGAAGGAGACTATGTTCCTGACTCTCCAGCACTGTCACCTATTGAGCTAA
AACAAGAACTGCCCAAATACCTGCCAGCCCTGCAGGGATGCAGGAGTGTAGAGGAGTTTCAGTGTCTGAA
CAGGATTGAAGAAGGCACCTATGGGGTGGTCTACAGAGCAAAGGACAAGAAAACAGATGAAATTGTGGCT
CTGAAGCGGTTAAAGATGGAGAAGGAGAAGGAAGGCTTCCCAATCACGTCGCTGAGGGAAATCAACACCA
TCCTCAAGGCCCAGCACCCCAACATCGTCACCGTCAGGGAAATTGTTGTGGGAAGTAACATGGACAAGAT
CTACATTGTGATGAACTACGTGGAACATGACCTCAAGAGCCTAATGGAGACCATGAAGCAGCCCTTCCTG
CCAGGGGAGGTGAAGACCCTGATGATTCAGCTGCTGAGTGGGGTAAAGCACCTCCATGACAATTGGATCC
TACACCGTGACCTGAAGACCTCTAACCTCCTGCTGAGCCATGCTGGCATTCTCAAGGTGGGCGACTTTGG
GCTGGCTCGGGAGTATGGTTCACCCCTAAAGGCCTACACTCCAGTTGTTGTAACCCTGTGGTATCGTGCC
CCAGAACTACTGCTTGGTGCTAAGGAATACTCCACAGCTGTGGACATGTGGTCGGTAGGCTGCATATTTG
GAGAACTGCTGACACAGAAACCTCTGTTCCCTGGGAAGTCAGATATTGATCAGATTAACAAGATTTTCAA
GGACCTGGGTACTCCTAGTGAGAAAATCTGGCCTGGCTATAATGACCTCCCAGCCGTCAAGAAGATGACC
TTCAGCGAGTATCCCTATAACAACCTCCGCAAGAGATTTGGGGCTTTGTTATCAGATCAAGGCTTTGATC
TCATGAACAAGTTCCTGACATACTACCCTGGCAGGAGGATCAACGCAGAAGATGGCCTCAAGCACGAATA
TTTCCGAGAGACTCCCCTCCCCATCGACCCATCCATGTTCCCCACGTGGCCTGCCAAGAGTGAGCAGCAG
AGAGTGAAGCGAGGCACGAGTCCACGGCCTCCTGAGGGCGGCCTGGGCTACAGCCAGCTGGGTGATGATG
ACCTGAAGGAGACGGGCTTCCACCTCACCACCACCAACCAGGGAGCCTCAGCTGCAGGCCCTGGCTTCAG
CCTCAAGTTCTGA

Translation (750 aa):
MSQSDDRDSKRDSLEEGELRDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEK
RKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERK
RERERKLREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREEYSDKGKVGHWSRSPLRPPRERFE
MGDNRKPVKEEKVEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEEGSTSEESEEE
EEEEEEEEEEETGSNSEEASEQSAEEVSDEEMSEDEDRENENHILVVPESRFDRDSGDSEEGEEEVGEGT
PQSSAPTEGDYVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVA
LKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFL
PGEVKTLMIQLLSGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRA
PELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKIFKDLGTPSEKIWPGYNDLPAVKKMT
FSEYPYNNLRKRFGALLSDQGFDLMNKFLTYYPGRRINAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQ
RVKRGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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