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Report for CCDS84884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84884.1 Public Mus musculus 5 Rfc1 23 108 98 CCDS HistoryNCBI Gene:19687Re-query CCDS DB by CCDS ID:84884.1Re-query CCDS DB by GeneID:19687See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172732.7 ENSMUSP00000134444.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172732.7Link to Ensembl Protein Viewer:ENSMUSP00000134444.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000172732Re-query CCDS DB by Protein ID:ENSMUSP00000134444
Original member NCBI NM_001347358.1 NP_001334287.1 Updated not alive Link to Nucleotide Sequence:NM_001347358.1Link to Protein Sequence:NP_001334287.1Re-query CCDS DB by Nucleotide ID:NM_001347358Re-query CCDS DB by Protein ID:NP_001334287
Current member NCBI NM_001347358.2 NP_001334287.1 Accepted alive Link to Nucleotide Sequence:NM_001347358.2Link to Protein Sequence:NP_001334287.1Re-query CCDS DB by Nucleotide ID:NM_001347358Re-query CCDS DB by Protein ID:NP_001334287Link to BLAST:NP_001334287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334287.1 1130 P35601-2 1130 99.9115% 0 1

Chromosomal Locations for CCDS 84884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65263063 65263146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65264243 65264431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65266102 65266315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65268948 65269093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65272141 65272258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65272378 65272532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65273951 65274049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65274375 65274470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65275382 65275519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65275690 65275781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65277357 65277471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65278711 65278820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65279457 65279814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65284849 65284953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65287890 65288069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65291087 65291194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65293658 65293935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65295954 65296044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65297399 65297476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65301933 65302010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65302976 65303208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65311041 65311163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65312958 65313033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65319405 65319530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65335524 65335526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGGACATTCGGAAATTCTTTGGGGTTATATCAAGTGGAAAAAAGCCTGTAAACGAGACAGTAAAGAATG
AGAAGACAAAAGCTTCGGAGGGAACTGTCAAAGGAAAAAAGGGAGTCAAGGAGGCCAAGGTCAATAACTC
CGGTAAAGAGGACGCCTCCAAACCAAAGCAGCACAGCAAGAAGAAGAGGATCATCAATGACTCAGACTCA
GAGTCAGAGGAGACAGTACAGGTAAAAAATGCTAAAAAGAAATCAGAAAAATTGTCACTGTCTTATAAAC
CTGGTAAAGTCTCTCAGAAGGATCCTGTCACCTACGTCTCTGAGACAGATGAAGATGATGACTTTGTATG
TAAAAAGGCAGCCTCCAAATCAAAAGAGAATGGAGTATCTACAAATAGTTACCTTGGAACATCAAACGTG
AAAAAAAATGAAGAAAACGTTAAGACTAAGAACAAGCCGTTATCTCCAATAAAACTCACACCAACGTCAG
TGCTCGACTATTTTGGAACTGAAAGTGTCCAGAGATCTGGGAAGAAGATGGTGACAAGCAAAAGGAAAGA
ATCTTCTCAAAACACAGAGGATTCCAGATTAAATGATGAGGCCATCGCCAAGCAGCTGCAGCTGGATGAA
GATGCAGAGCTGGAGAGGCAGTTGCATGAAGATGAAGAATTTGCAAGAACACTGGCCTTATTGGATGAAG
AACCCAAGATCAAAAAGGCCCGAAAGGATTCTGAAGAGGGAGAAGAATCATTTTCATCTGTCCAAGATGA
TTTAAGCAAAGCAGAAAAGCAGAAAAGCCCTAATAAAGCCGAGCTTTTCTCAACTGCAAGAAAGACCTAC
AGTCCTGCTAAGCATGGCAAGGGGAGGGCTTCAGAAGATGCTAAGCAGCCTTGCAAATCAGCTCACCGGA
AGGAAGCCTGTTCCTCACCCAAGGCCAGTGCCAAACTGGCGCTTATGAAAGCAAAAGAAGAAAGTTCTTA
CAACGAAACAGAGCTGCTGGCTGCAAGAAGAAAAGAAAGCGCCACTGAACCCAAAGGAGAGAAAACAACT
CCTAAGAAAACGAAAGTTTCTCCAACTAAGAGAGAGTCTGTAAGCCCAGAAGACTCTGAAAAGAAGCGCA
CTAATTATCAAGCTTATCGAAGCTACTTGAACCGAGAAGGTCCCAAAGCTCTGGGCTCCAAAGAAATACC
CAAGGGAGCTGAAAATTGCTTGGAAGGCCTGACGTTTGTGATCACAGGAGTGCTGGAGTCCATTGAACGA
GACGAAGCCAAGTCTCTAATTGAACGTTATGGGGGGAAAGTAACAGGAAACGTGAGCAAGAAAACCAACT
ACCTCGTCATGGGCCGCGACAGTGGGCAGTCCAAGAGTGACAAGGCAGCAGCTCTGGGAACAAAAATCCT
CGATGAAGACGGCCTGTTGGATCTGATTCGAACTATGCCAGGCAAGAGATCCAAGTATGAGATGGCTGCT
GAGGCTGAGATGAAGAAAGAAAAGTCCAAATTGGAGCGAACACCCCAAAAAAATGATCAAGGAAAAAGAA
AAATTAGTCCAGCCAAGAAGGAGTCAGAGTCTAAAAAGTGCAAGCTGACTCTCCTAAAGAACAGTCCTAT
GAAGGCAGTGAAGAAGGAGGCAAGCACGTGCCCAAGGGGCCTGGATGTCAAGGAGACACATGGCAACCGC
AGTAGCAACAAAGAGGAATGTCTGCTCTGGGTGGATAAGTACAAGCCCGCCTCACTCAAGAACATAATCG
GACAGCAGGGTGACCAGAGCTGTGCCAACAAATTACTACGTTGGCTCAGAAACTGGCACAAGAGTTCTCC
TGAAGAGAAAAAACATGCAAAGTTTGGCAAACTTGCCAGCAAAGATGATGGCTCCAGTTTCAAGGCAGCT
CTGCTGTCTGGCCCTCCAGGTGTTGGCAAAACCACTACAGCTTCTCTTGTGTGTCAGGAATTGGGCTACA
GTTATGTGGAACTAAATGCAAGTGATACTCGGAGTAAGAACAGTTTGAAAGCAGTTGTTGCTGAATCCTT
GAACAACACCAGCATCAAAGGCTTTTATACAAGTGGAGCGGCTCCTTCCGTGAGTGCGAGGCACGCCCTC
ATCATGGATGAGGTCGATGGCATGGCAGGCAATGAAGACAGGGGTGGAATTCAGGAGCTAATAGGCCTGA
TAAAGCATACTAAAATTCCCATCATTTGTATGTGCAATGATAGAAACCACCCCAAAATTCGCTCATTGGT
TCATTATTGTTTTGATCTTCGTTTCCAAAGACCTCGAGTTGAACAGATTAAGAGTGCAATGCTGTCTATT
GCATTTAAAGAGGGTTTAAAAATCCCCCCTCCAGCTATGAATGAAATAATTTTGGGAGCTAATCAAGATG
TCAGACAGGTTTTACACAATCTCAGTATGTGGTGTGCACAAAGTAAGGCCCTGACCTATGACCAAGCCAA
GGCTGATTCTCAGAGGGCTAAGAAGGATATCAGACTGGGCCCATTTGATGTCACTCGGAAAGTGTTTGCA
GCTGGAGAGGAGACTGCACACATGTCACTGATGGACAAGTCAGATCTCTTCTTCCATGACTATTCCATAG
CACCCCTCTTTGTCCAGGAGAACTACCTGCATGTAAAGCCTGTGGCTGCAGGAGGTGACATGAAAAAGCA
CTTGATGCTTTTAAGCCGGGCAGCAGATAGCATATGTGACGGTGACTTAGTGGACAATCAGATCCGGAGT
AAGCAAAACTGGAGTCTTCTGCCCACCCAGGCCATCTATGCCAGTGTTCTTCCTGGAGAGTTGATGCGGG
GCTACATGACTCAGTTTCCGAGCTTCCCGAGCTGGCTGGGGAAGCACTCGTCTACGGGCAAACATGATCG
GATTGTTCAGGACCTATCCTTGCACATGAGTCTTAGAACTTACTCCAGCAAAAGGACAGTGAACATGGAT
TACCTGTCACACATCAGAGACGCACTTGTACGACCCTTGACCTCACAAGGGGTAGAAGGGGCTCAGCATG
TCATCAAACTTATGGACACATACTATCTGATGAAAGAAGATTTTGAGAACATCATGGAAGTTAGCAGCTG
GGGGGGCAAGCCCAGTGCCTTTTCCAAGCTGGATCCCAAGGTGAAAGCGGCCTTCACAAGAGCCTACAAT
AAGGAGGCCCACCTGACCCCATACTCACTTCAGGTAGTAAAGACATCGAGGCTCAGCACGGGTCCAGCAC
TGGATTCTGAGTACAGTGAGGAGTTCCAGGAAGATGACACTCAGTCTGAGAAAGAGCAGGATGCAGTGGA
GACTGACGCCATGATCAAGAAAAAGACAAGATCTTCAAAACCTTCAAAGTCAGAAAGAGAGAAGGAGTCC
AAAAAAGGAAAAGGAAAGAATTGGAAGAAATGA

Translation (1130 aa):
MDIRKFFGVISSGKKPVNETVKNEKTKASEGTVKGKKGVKEAKVNNSGKEDASKPKQHSKKKRIINDSDS
ESEETVQVKNAKKKSEKLSLSYKPGKVSQKDPVTYVSETDEDDDFVCKKAASKSKENGVSTNSYLGTSNV
KKNEENVKTKNKPLSPIKLTPTSVLDYFGTESVQRSGKKMVTSKRKESSQNTEDSRLNDEAIAKQLQLDE
DAELERQLHEDEEFARTLALLDEEPKIKKARKDSEEGEESFSSVQDDLSKAEKQKSPNKAELFSTARKTY
SPAKHGKGRASEDAKQPCKSAHRKEACSSPKASAKLALMKAKEESSYNETELLAARRKESATEPKGEKTT
PKKTKVSPTKRESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIER
DEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGKRSKYEMAA
EAEMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNR
SSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAKFGKLASKDDGSSFKAA
LLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHAL
IMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSI
AFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFA
AGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRS
KQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTYSSKRTVNMD
YLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYN
KEAHLTPYSLQVVKTSRLSTGPALDSEYSEEFQEDDTQSEKEQDAVETDAMIKKKTRSSKPSKSEREKES
KKGKGKNWKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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