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Report for CCDS84982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84982.1 Public Mus musculus 5 Gal3st4 23 108 98 CCDS HistoryNCBI Gene:330217Re-query CCDS DB by CCDS ID:84982.1Re-query CCDS DB by GeneID:330217See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161647.7 ENSMUSP00000125084.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161647.7Link to Ensembl Protein Viewer:ENSMUSP00000125084.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161647Re-query CCDS DB by Protein ID:ENSMUSP00000125084
Original member Current member NCBI NM_001347507.1 NP_001334436.1 Accepted alive Link to Nucleotide Sequence:NM_001347507.1Link to Protein Sequence:NP_001334436.1Re-query CCDS DB by Nucleotide ID:NM_001347507Re-query CCDS DB by Protein ID:NP_001334436Link to BLAST:NP_001334436.1

Chromosomal Locations for CCDS 84982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138265293 138266306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138270768 138271071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138271279 138271380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138272732 138272739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCCTGGACCATGAGGCTCTGGAGGCCTCGGAGCCTGGGGGTGGCTCTGGGAGTCTTCATGACCATTG
GATTTGGCCTCCAGTTCCTGGGGGGATCATTCCAGAGGAGACTACCTGGACTGCAGCTCCGACAGTCCTG
GGTCCCTTCACTGGGATCAACTGTTAAGTCTTGCCTACCCCGACAGCGACTTGTGTTCTTGAAGACACAC
AAATCTGGGAGCAGCTCTGTGCTCAATCTCCTTCATCGCTATGGGGACCAGCAGGGGCTACGTTTTGCCC
TGCCTGCCCACTACCAGTTTGGCTACCCAAAGCTTTTCCAGGCTTCTAAGGTCAAAGGCTACCATCCCCA
GAGTGCGGATACTCAGAAGCCTTTCCATATCCTCTGCCATCACATGAGATTCAACCTCAAAGAGGTACTT
CAGGTCATGCCTTCTGATAGCTTCTTCTTTTCCATTGTCCGAGATCCAGCAGCTCTAGCCCGCTCTGCCT
TCTCCTATTACAAATCAGTTTCATCGGCTTTCCGAAAGGCACCGTCTTTGGCCGCCTTCCTGTCCAATCC
TCAAGCCTTCTACAGACCCGGAGCCCGTGGCAACCACTACGCCCGTAACTTACTATGGTTTGACTTTGGT
TTGCCCTCTCCCCCAGAGACAAAGACCATGAAAGTGAGTCCCCAGCTACCCAGAGACCCCAAATCTCTCC
AGCTACATATTGTACCTTCCGGTGCTAGCCCTGGAACTCTCTTCCGTCCTGTTACCACAGCTGCTGATAG
TTACAAGCAGCCAGCCAGCCTTGTCTCCTCAGATTTTAGGCCCTCATCCTTTATCCAATGGGGTCTGGCC
TGGTTGGACTCAGTCTTTGACCTGGTCATGGTGGCCGAGTACTTTGATGAGTCACTGGTCCTGTTGGCAG
ATGCCCTGTGCTGGAGTCTGGACGATGTGGTGGGCTTCATGCACAATGCCCAGGCTGGAAAAAAGCAGAG
TCTTATCAGAACTGCCAATAAGACTGTGGTGACTGGTGAAGATCAGCAGCTAACCAAACAGGCCCGAGCT
TGGAATAACTTGGATTGGGCTCTTTATATTCACTTCAACCGTAGTCTGTGGGCGCGGATAGAACAGTATG
GCAGGAGTCGACTGCAACGTGCTGTGGCTGAGCTCCGGGCTCGAAGAGAAGCTCTGGCTAAACGTTGCTT
GGTGGGAGGTGAGGCTTTAGACCCCAAATACATCGCTGATGCAAAGCTCCGTCCTTTACAGTTTGGTTCA
GCTAAGGTATTGGGCTATGTACTTCAGAGTGGACTAAACCAGAAAGACAAAGAGGAATGTGAACGCTTGG
CTACTCCAGAGCTACAGTATAAGGATAAACTTGATGCTAAGCAGTTTCCTCCTACAGTCTCCTCGCCTCT
CAAGACCTCAAGGCTACTGTCCCCATAG

Translation (475 aa):
MAWTMRLWRPRSLGVALGVFMTIGFGLQFLGGSFQRRLPGLQLRQSWVPSLGSTVKSCLPRQRLVFLKTH
KSGSSSVLNLLHRYGDQQGLRFALPAHYQFGYPKLFQASKVKGYHPQSADTQKPFHILCHHMRFNLKEVL
QVMPSDSFFFSIVRDPAALARSAFSYYKSVSSAFRKAPSLAAFLSNPQAFYRPGARGNHYARNLLWFDFG
LPSPPETKTMKVSPQLPRDPKSLQLHIVPSGASPGTLFRPVTTAADSYKQPASLVSSDFRPSSFIQWGLA
WLDSVFDLVMVAEYFDESLVLLADALCWSLDDVVGFMHNAQAGKKQSLIRTANKTVVTGEDQQLTKQARA
WNNLDWALYIHFNRSLWARIEQYGRSRLQRAVAELRARREALAKRCLVGGEALDPKYIADAKLRPLQFGS
AKVLGYVLQSGLNQKDKEECERLATPELQYKDKLDAKQFPPTVSSPLKTSRLLSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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