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Report for CCDS85021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85021.1 Public Mus musculus 6 Ccdc136 23 108 98 CCDS HistoryNCBI Gene:232664Re-query CCDS DB by CCDS ID:85021.1Re-query CCDS DB by GeneID:232664See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145310.7 ENSMUSP00000145331.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145310.7Link to Ensembl Protein Viewer:ENSMUSP00000145331.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145310Re-query CCDS DB by Protein ID:ENSMUSP00000145331
Original member NCBI NM_001347073.1 NP_001334002.1 Updated not alive Link to Nucleotide Sequence:NM_001347073.1Link to Protein Sequence:NP_001334002.1Re-query CCDS DB by Nucleotide ID:NM_001347073Re-query CCDS DB by Protein ID:NP_001334002
Current member NCBI NM_001347073.2 NP_001334002.1 Accepted alive Link to Nucleotide Sequence:NM_001347073.2Link to Protein Sequence:NP_001334002.1Re-query CCDS DB by Nucleotide ID:NM_001347073Re-query CCDS DB by Protein ID:NP_001334002Link to BLAST:NP_001334002.1

Chromosomal Locations for CCDS 85021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29396685 29396742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29397479 29397586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29399201 29399449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29399535 29399609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29405871 29406191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29409225 29409336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29410074 29410242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29411248 29411385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29421991 29422092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGAGGCAGGCGGCGGGGCCGGCGCGGGAGCCGCGGGCTGGAGCTGCCCTGGCCCAGGACCCACAGTAA
CCACTTTAGGCTCCTATGAGGTATCTGAGGGTTGTGAGAGGAAGAAAGGCCAACGCTGGGGGTCTCTGGA
GCGCCGTGGGATGCAAGCTATGGACGGGGAGGTGTTACTTCCAGCTCTATATGAGGAAGAGGAGGAGGAA
GAGGAGGAAGAGGAAGAGGTCGAAGAAGAGCAAGTAGAGAAAGGAGGCAGTTTGGGCTCCCTTTCAATGG
GCAAGCATCGGGGCCTGAGCCTGACAGAGACAGAGCTGGAGGAGCTGAGGGCCCAGGTGCTGCAGCTGGT
GGCAGAGCTGGAGGAGACCCGTGAGCTTGCTGGGCAGCATGAAGATGACTCCCTGGAGCTTCAGGGGCTC
CTGGAGGATGAGCGGCTGGCCAGTGCCCAGCAAGCAGAAGTATTCACCAAGCAGATTCAGCAGCTCCAAG
GTGAGCTGCAACATCTACGGGAGGAGATTTCCCTGTTAGAGCATGAGAAGGAAAGCGAACTTAAAGAAAT
GGAGCAGGAGTTGCATTTGGCCCAAGCAGAGATCCAAAATCTACGGCAAGCTGCGGCAGACTCTGCCACT
GAACATGAGAGTGACATAGCGTCCTTGCAGGATGATCTCTGCCGGTTGCAGAATGATCTCGATGACATGG
AGCGCATTCGAGGGGACTATGAGATGGAGATTGCCTCGCTCCGGGCAGAAATGGAATTGAAGACTTCTGA
ACCATCTAATCTAAGCATCTCCGACTTCTCTGGGATACAAGATGAACTACACCATCTTCGGGAGCGCTAC
AACTTACTGAATGAGGAGTATCAGGCCTTGCGGGAGAGCAACAGCAGCCTCACAGGGCAGCTTGCTGAGC
TGGAGAGTGATAGGACACGGAGAGCAACAGAGCGATGGTTGGAATCTCACCTGCTACGGAGTACGATGTC
CTCCGAGTCTCAGACGTCAGAACTGGATTTCCCAGAGCCTGACCCTGTGATGCAGCTTTTGCGCCAGCAG
CTGCTGGGAGCTGAGGAACAGATGCAGGACATGCAGGACAAGTGTAAGAACTTGTATTGTGAATTGGAAG
AGCTACAGCATCACCGCAGAACCAGTGAGGAGGAGCAGAAGCGGCTGCAGAGGGAGCTCAAGTGTGCCCA
GAATGAGGTGCTCCGGTTTCAGACCTCCCACAGCACCCAGCCATCCCCTGCCCCTGATCCCCCCATATTC
TCCTTGCCTCTTGTAGGCCTGGTGGTCATATCAGCTCTGCTCTGGTGCTGGTGGGCTGAGACATCGTCCT
AA

Translation (443 aa):
MEAGGGAGAGAAGWSCPGPGPTVTTLGSYEVSEGCERKKGQRWGSLERRGMQAMDGEVLLPALYEEEEEE
EEEEEEVEEEQVEKGGSLGSLSMGKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGL
LEDERLASAQQAEVFTKQIQQLQGELQHLREEISLLEHEKESELKEMEQELHLAQAEIQNLRQAAADSAT
EHESDIASLQDDLCRLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPSNLSISDFSGIQDELHHLRERY
NLLNEEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLRSTMSSESQTSELDFPEPDPVMQLLRQQ
LLGAEEQMQDMQDKCKNLYCELEELQHHRRTSEEEQKRLQRELKCAQNEVLRFQTSHSTQPSPAPDPPIF
SLPLVGLVVISALLWCWWAETSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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