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Report for CCDS85039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85039.1 Public Mus musculus 6 Atp6v0e2 23 108 98 CCDS HistoryNCBI Gene:76252Re-query CCDS DB by CCDS ID:85039.1Re-query CCDS DB by GeneID:76252See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203011.1 ENSMUSP00000145198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203011.1Link to Ensembl Protein Viewer:ENSMUSP00000145198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203011Re-query CCDS DB by Protein ID:ENSMUSP00000145198
Original member Current member NCBI NM_001347164.1 NP_001334093.1 Accepted alive Link to Nucleotide Sequence:NM_001347164.1Link to Protein Sequence:NP_001334093.1Re-query CCDS DB by Nucleotide ID:NM_001347164Re-query CCDS DB by Protein ID:NP_001334093Link to BLAST:NP_001334093.1

Chromosomal Locations for CCDS 85039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48537751 48537854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48539224 48539271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48540428 48540614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGACAGCCCATTCCTTTGCCCTCCCTGTCATCATCTTCACCACATTCTGGGGCCTCATCGGCATCGCTG
GGCCCTGGTTCGTGCCCAAAGGACCCAACCGCGGGGTGATCATCACCATGCTGGTAGCTACTGCTGTCTG
CTGTTACCTCTTATGCCCTGCTGTGAAGGGTGAATGGCCCAGCCTTGATGTCCCTGGAGACCCTGCATTC
CCTCTGGCCCCACCCATCTGTATGACCATCCTGTGCTCGCCCTGCCATCATGCTGTGGAATCCATAACCC
CCAGAGCCAACCTGGTTTCAGTTTCTGGTCTCAGTTTCCCCTGTGTTCCCAGCTATTAG

Translation (112 aa):
MTAHSFALPVIIFTTFWGLIGIAGPWFVPKGPNRGVIITMLVATAVCCYLLCPAVKGEWPSLDVPGDPAF
PLAPPICMTILCSPCHHAVESITPRANLVSVSGLSFPCVPSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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