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Report for CCDS85164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85164.1 Public Mus musculus 6 Rhno1 23 108 98 CCDS HistoryNCBI Gene:72440Re-query CCDS DB by CCDS ID:85164.1Re-query CCDS DB by GeneID:72440See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057421.14 ENSMUSP00000054573.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057421.14Link to Ensembl Protein Viewer:ENSMUSP00000054573.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057421Re-query CCDS DB by Protein ID:ENSMUSP00000054573
Original member Current member EBI ENSMUST00000112151.1 ENSMUSP00000107778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112151.1Link to Ensembl Protein Viewer:ENSMUSP00000107778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112151Re-query CCDS DB by Protein ID:ENSMUSP00000107778
Original member Current member EBI ENSMUST00000112152.7 ENSMUSP00000107779.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112152.7Link to Ensembl Protein Viewer:ENSMUSP00000107779.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112152Re-query CCDS DB by Protein ID:ENSMUSP00000107779
Original member Current member EBI ENSMUST00000223237.1 ENSMUSP00000152251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223237.1Link to Ensembl Protein Viewer:ENSMUSP00000152251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223237Re-query CCDS DB by Protein ID:ENSMUSP00000152251
Original member Current member NCBI NM_001326583.1 NP_001313512.1 Accepted alive Link to Nucleotide Sequence:NM_001326583.1Link to Protein Sequence:NP_001313512.1Re-query CCDS DB by Nucleotide ID:NM_001326583Re-query CCDS DB by Protein ID:NP_001313512Link to BLAST:NP_001313512.1
Original member Current member NCBI NM_001326585.1 NP_001313514.1 Accepted alive Link to Nucleotide Sequence:NM_001326585.1Link to Protein Sequence:NP_001313514.1Re-query CCDS DB by Nucleotide ID:NM_001326585Re-query CCDS DB by Protein ID:NP_001313514Link to BLAST:NP_001313514.1
Original member Current member NCBI NM_001326586.1 NP_001313515.1 Accepted alive Link to Nucleotide Sequence:NM_001326586.1Link to Protein Sequence:NP_001313515.1Re-query CCDS DB by Nucleotide ID:NM_001326586Re-query CCDS DB by Protein ID:NP_001313515Link to BLAST:NP_001313515.1
Original member Current member NCBI NM_001326587.1 NP_001313516.1 Accepted alive Link to Nucleotide Sequence:NM_001326587.1Link to Protein Sequence:NP_001313516.1Re-query CCDS DB by Nucleotide ID:NM_001326587Re-query CCDS DB by Protein ID:NP_001313516Link to BLAST:NP_001313516.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313512.1 235 Q8K3A4 235 99.5745% 0 1
NP_001313514.1 235 Q8K3A4 235 99.5745% 0 1
NP_001313515.1 235 Q8K3A4 235 99.5745% 0 1
NP_001313516.1 235 Q8K3A4 235 99.5745% 0 1

Chromosomal Locations for CCDS 85164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128357651 128358193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128359106 128359270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCCTCCCAAAAAGAGACGCAGACAGTCCCAGAAAGCCCAGCTGCTGTTTCACCAACAGCCACTGGAGG
GCCCCAAACACCACTATGAATCTTGCCAGCAGCCCATTACCCACACTGTTCAGGTGCCCAGCAAGCCCAT
TGATCAGAGCACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGAGCAGCGGAAAGCCGGTTTCTGATA
CACCGGAAGCCTCACCGAGACCAGGCAAGGCGCCCAACTCGGAGATCTACCTGCAAGTTTCCACGTCTAA
CCTTTGAGAGTCCACAGTCTTCCAGTTCAGAGACGTTGTTGCTATCCAACCGAGTGCAGCCCCAGAACTC
AGAAAAGGACCCACCCAGAAGGCCTTTAGTGCCATTGTTCAGTCCCCAGAGCTGTGGAGAACTGTCAGTG
CATGTACCTCACAGTTTACCTCATGTGTTCGCACCCCCTGACATCCAGACCCCAGACTCTTCTGTAAGAG
ACGATCCCATTTCCCCAGACCAGAAGGAAAACAGTTTTCCAAGCTGCATCCTTGGCCCTGGGACTCCCAG
CAGCCCAGAGCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGGAGAAGTATGGGATTAAGGTCACGTGG
AGACGCAGAAGGCACCTGTTTGCCTACCTTAAGGAGAAGGGGAAGCTGGATGGAAGCCAGTTCCTTGTGA
AGATCTGA

Translation (235 aa):
MPPKKRRRQSQKAQLLFHQQPLEGPKHHYESCQQPITHTVQVPSKPIDQSTVTSWVSPQFDRAAESRFLI
HRKPHRDQARRPTRRSTCKFPRLTFESPQSSSSETLLLSNRVQPQNSEKDPPRRPLVPLFSPQSCGELSV
HVPHSLPHVFAPPDIQTPDSSVRDDPISPDQKENSFPSCILGPGTPSSPEPGPVLVKDTPEEKYGIKVTW
RRRRHLFAYLKEKGKLDGSQFLVKI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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