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Report for CCDS85316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85316.1 Public Mus musculus 7 Synm 23 108 98 CCDS HistoryNCBI Gene:233335Re-query CCDS DB by CCDS ID:85316.1Re-query CCDS DB by GeneID:233335See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208231.1 ENSMUSP00000147089.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208231.1Link to Ensembl Protein Viewer:ENSMUSP00000147089.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208231Re-query CCDS DB by Protein ID:ENSMUSP00000147089
Original member Current member NCBI NM_183312.3 NP_899135.3 Accepted alive Link to Nucleotide Sequence:NM_183312.3Link to Protein Sequence:NP_899135.3Re-query CCDS DB by Nucleotide ID:NM_183312Re-query CCDS DB by Protein ID:NP_899135Link to BLAST:NP_899135.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899135.3 371 Q70IV5-3 371 99.7305% 0 1

Chromosomal Locations for CCDS 85316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 67733444 67733553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67739105 67739175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67751804 67751928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67758819 67759628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGCTGTCCTGGCGGCTGCAGACGGGCTCTGAAAAGGCGGAGCTGCAGGAGCTCAACGCCCGGCTTTACG
ACTACGTGTGCCGGGTGCGAGAGCTGGAGCGCGAGAACCTGCTACTGGAGGAGGAGTTGCGCAGCCGGCT
GAGCCGGGAGGACCGCTGGGCTGAGGATCAGGCACTCTACGCCGAGGAGGCGCGCAGCCTACGACAGCAG
CTAGATGAACTGAACTGGTCCACAGCCCTGGCCGAGGGCGAGCGCGACGCGCTGCGGAGGGAACTGCTGG
AGCTGCAGCGGGAGGGTGTGGAAGCCGGCACTGCCCGCAGCCGCCTGGATGCCGAGCTGGGAGCGCAACG
GCGGGAGCTAGAGGAGGCTCTGGGCGCGCGCGCCGCCCTCGAGGCGCTGCTGGGCCGGCTGGAAACTGAG
CGCCGCGACTTGGACGCTGCCCACGAACGCCAAGTGCGAGATCTACGAGCCCGCGCTGCCAGCCTCACCA
TGCACTTCCGAGCCCGCGCCACCAGCCCCGCCGCGCCCCCGCCGCGCCTGCGGGACGTGCACGACAGCTA
CGCCCTGCTGGTGGCCGAGTCGTGGAGGGAGAGCGTGCAGCTGTACGAGGACGAGGTGCGCGAGCTGGAG
CAGGCGCTGCGCCGCGGCCAAGAGAGCCGGCTCCAGGCGGAGGACGAGGCGCGGCTGTGCGCGCAGGAGG
CAGACGCGCTGCGGAACCAGGCGCTGGAGTTGGAGCAGCTGCGCGCGAGGCTGGAGGATGAGCTGCTGCG
GATGCGCGAGGAGTACGGGATGCAGGCGGAGGAGCGGCAGAGAGTGATTGACAGCCTGGAGGATGAGAAG
GAAGCCCTTACCTTGGCCATGGCTGACCGGCTGCGGGATTACCAGGAGCTCCTGCAGGTGAAGACTGGAC
TCAGCTTGGAGGTAGCCACCTACAGGGCCTTGTTGGAAGGAGAAAGCAATCCGGAGATATTGATCTGGAC
TGAGAACATTGAAAACGTGCCACAAGATGGATCTGAGCGACACGAGAGCGATCCGCAGCTGGACCCGAGA
CACAGGGTCGGAAGTGGAAGCTCACGGCGTGTCTCACCGTGGTGGCTGGAGAATTGCACACAGTAG

Translation (371 aa):
MLSWRLQTGSEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQ
LDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETE
RRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELE
QALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEK
EALTLAMADRLRDYQELLQVKTGLSLEVATYRALLEGESNPEILIWTENIENVPQDGSERHESDPQLDPR
HRVGSGSSRRVSPWWLENCTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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