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Report for CCDS85377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85377.1 Public Mus musculus 7 Lmo1 23 108 98 CCDS HistoryNCBI Gene:109594Re-query CCDS DB by CCDS ID:85377.1Re-query CCDS DB by GeneID:109594See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208136.1 ENSMUSP00000146588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208136.1Link to Ensembl Protein Viewer:ENSMUSP00000146588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208136Re-query CCDS DB by Protein ID:ENSMUSP00000146588
Original member NCBI NM_001302206.1 NP_001289135.1 Updated not alive Link to Nucleotide Sequence:NM_001302206.1Link to Protein Sequence:NP_001289135.1Re-query CCDS DB by Nucleotide ID:NM_001302206Re-query CCDS DB by Protein ID:NP_001289135
Current member NCBI NM_001302206.2 NP_001289135.1 Accepted alive Link to Nucleotide Sequence:NM_001302206.2Link to Protein Sequence:NP_001289135.1Re-query CCDS DB by Nucleotide ID:NM_001302206Re-query CCDS DB by Protein ID:NP_001289135Link to BLAST:NP_001289135.1

Chromosomal Locations for CCDS 85377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109138871 109138976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109140582 109140707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109143456 109143661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCGCAGGCTGCAACCGCAAGATCAAGGACCGGT
ACCTGCTGAAGGCACTGGACAAGTACTGGCATGAGGACTGCCTCAAGTGTGCCTGCTGTGACTGTCGCCT
GGGCGAGGTGGGCTCCACTCTCTACACCAAGGCCAACCTCATCCTGTGCCGGCGTGACTACCTGAGGCTT
TTTGGCACCACAGGAAACTGTGCTGCCTGCAGCAAGCTGATCCCAGCTTTTGAGATGGTGATGCGGGCCC
GAGACAATGTGTATCACCTTGACTGCTTCGCCTGCCAGCTCTGCAATCAGAGATTTTGCGTGGGAGACAA
ATTCTTCCTGAAGAACAACATGATCTTGTGCCAGGTGGACTATGAGGAGGGGCATCTCAATGGCACCTTT
GAATCCCAGGTTCAGTAA

Translation (145 aa):
MLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL
FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVDYEEGHLNGTF
ESQVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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