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Report for CCDS8563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8563.1 Public Homo sapiens 12 GPR162 24 110 108 CCDS HistoryNCBI Gene:27239Re-query CCDS DB by CCDS ID:8563.1Re-query CCDS DB by GeneID:27239See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311268.8 ENSP00000311528.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311268.8Link to Ensembl Protein Viewer:ENSP00000311528.3Re-query CCDS DB by Nucleotide ID:ENST00000311268Re-query CCDS DB by Protein ID:ENSP00000311528
Original member Current member NCBI NM_019858.2 NP_062832.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019858.2Link to Protein Sequence:NP_062832.1Re-query CCDS DB by Nucleotide ID:NM_019858Re-query CCDS DB by Protein ID:NP_062832Link to BLAST:NP_062832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062832.1 588 Q16538-1 588 100% 0 0

Chromosomal Locations for CCDS 8563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6823899 6824765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6825484 6825673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6826196 6826353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6826653 6827204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCTCGGGGCGGGGCGGGGGCAGAGGAGGCCTCCCTGCGCTCCAACGCATTGTCCTGGCTGGCCTGTG
GGCTCCTGGCGCTGCTGGCCAATGCCTGGATCATCCTCAGCATCTCGGCCAAGCAGCAGAAGCACAAGCC
ACTGGAGCTGCTGCTCTGCTTCCTAGCGGGCACACACATACTCATGGCAGCTGTGCCCCTCACCACCTTT
GCCGTGGTGCAGCTGCGTCGTCAGGCTTCCTCCGACTATGACTGGAACGAGAGTATCTGCAAGGTCTTCG
TGTCCACCTACTACACCCTGGCGCTGGCCACCTGCTTCACGGTCGCCTCCCTCTCCTACCATCGCATGTG
GATGGTGCGCTGGCCCGTCAACTACCGCCTCAGCAACGCCAAGAAGCAGGCACTGCATGCCGTCATGGGC
ATCTGGATGGTCAGCTTCATCCTCTCCACACTGCCCTCCATTGGCTGGCACAACAACGGCGAGCGCTACT
ATGCCCGCGGCTGCCAGTTCATAGTCTCCAAGATCGGCCTCGGCTTTGGCGTTTGCTTCAGCCTCTTGCT
ACTTGGGGGAATTGTCATGGGTCTGGTCTGTGTGGCCATCACCTTCTACCAGACACTGTGGGCCCGGCCC
CGGAGGGCTCGGCAGGCCCGGAGAGTGGGGGGTGGTGGGGGGACCAAAGCGGGTGGGCCAGGGGCCTTGG
GTACCCGGCCAGCTTTTGAGGTACCAGCCATTGTGGTGGAGGATGCCCGAGGGAAGCGGCGGTCCTCGCT
GGATGGCTCGGAGTCTGCCAAGACATCCCTGCAGGTCACCAACTTGGTCAGCGCCATCGTCTTTCTCTAT
GACTCACTCACAGGGGTGCCCATCTTGGTGGTGAGCTTCTTCTCCCTCAAGTCGGACTCGGCGCCCCCCT
GGATGGTGCTGGCTGTGCTGTGGTGCTCCATGGCACAGACGCTGCTGCTGCCCTCCTTCATCTGGTCCTG
CGAGCGCTACCGCGCCGACGTGCGCACAGTGTGGGAGCAATGCGTGGCCATCATGTCTGAGGAGGATGGA
GATGACGATGGGGGCTGTGACGACTATGCAGAGGGCCGAGTTTGCAAAGTTCGCTTTGATGCTAACGGAG
CCACAGGACCAGGGAGCCGGGACCCCGCCCAGGTGAAGCTGCTGCCTGGAAGGCACATGCTCTTCCCTCC
TCTTGAGAGAGTCCACTACTTACAGGTCCCCCTATCCCGGCGTCTGTCCCATGATGAGACAAACATCTTC
TCTACCCCTCGGGAACCAGGCTCCTTCCTGCACAAGTGGTCATCCTCTGATGACATCCGGGTCCTCCCAG
CCCAGAGCCGGGCCCTCGGGGGTCCTCCTGAGTACCTGGGACAAAGACACAGGTTGGAGGACGAGGAGGA
CGAGGAAGAGGCTGAAGGTGGGGGGCTGGCCAGCCTTCGCCAATTCTTGGAGAGTGGGGTTCTGGGGTCA
GGTGGGGGACCCCCACGGGGTCCTGGCTTCTTCCGGGAGGAGATCACCACCTTCATCGATGAGACACCTC
TGCCTTCTCCGACTGCCTCACCAGGGCACTCTCCTCGTCGGCCCCGGCCACTGGGCCTCTCACCCCGCCG
ACTCTCCCTTGGGTCCCCTGAGAGCAGAGCCGTTGGACTTCCTTTGGGACTAAGCGCAGGGAGACGCTGC
TCCCTGACGGGGGGTGAAGAAAGTGCAAGGGCTTGGGGAGGATCCTGGGGCCCAGGCAACCCCATCTTTC
CCCAGCTGACCCTGTGA

Translation (588 aa):
MARGGAGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAVPLTTF
AVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMG
IWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVAITFYQTLWARP
RRARQARRVGGGGGTKAGGPGALGTRPAFEVPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLY
DSLTGVPILVVSFFSLKSDSAPPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEEDG
DDDGGCDDYAEGRVCKVRFDANGATGPGSRDPAQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIF
STPREPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQRHRLEDEEDEEEAEGGGLASLRQFLESGVLGS
GGGPPRGPGFFREEITTFIDETPLPSPTASPGHSPRRPRPLGLSPRRLSLGSPESRAVGLPLGLSAGRRC
SLTGGEESARAWGGSWGPGNPIFPQLTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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