NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85799.1 Public Mus musculus X Apool 23 108 98 CCDS HistoryNCBI Gene:68117Re-query CCDS DB by CCDS ID:85799.1Re-query CCDS DB by GeneID:68117See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85799.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113415.1 ENSMUSP00000109042.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113415.1Link to Ensembl Protein Viewer:ENSMUSP00000109042.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113415Re-query CCDS DB by Protein ID:ENSMUSP00000109042
Original member Current member NCBI NM_001313734.1 NP_001300663.1 Accepted alive Link to Nucleotide Sequence:NM_001313734.1Link to Protein Sequence:NP_001300663.1Re-query CCDS DB by Nucleotide ID:NM_001313734Re-query CCDS DB by Protein ID:NP_001300663Link to BLAST:NP_001300663.1

Chromosomal Locations for CCDS 85799.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112311422 112311436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112346238 112346357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112349801 112349855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112351300 112351398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112354161 112354252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112364462 112364570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112372194 112372282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGCGGCCTTTAGGCTCCCCATATATACTGCACCACCCCTCCATTCTAAATATGTTGAAGAACAGCCTG
GTAATTTACAAAGGGGCTTTGCATCCATCCGTACTACAACCGTGTATTATATTGGCTGGTGCAAGAGCAT
TTATCTCTTTATGAAGAATGGGGTTATGGATACAGTACAGTTTGGAAAAGATGCATATGTCTATCTGAAG
AATCCTCCGCAAGATTTTCTCCCCAAAATGGGAGTGATTACAGCTTCGGGACTGGCAGGTTTGCTTTCAG
CAAGAAAAGGTTCCAGGTTTAAGAAGATTGCTTATCCACTAGGACTGGCCACATTAGGAGCGACTGTTTG
CTACCCAGCTCAGTCAGTAATAATTGCAAAGGAAGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGAC
CTGAAACATTCAGTGTCTTTGCCAAAAGAACTTGCCTCTGCAACAGTGATTAAATCAGAATCTACCTCAG
GTACTACACAGTTCATTCCTGACCCCAAGCTCATGGATCATGGGCAGTCTCATCCAGATGATAAAGATAT
GTACAGCACTAGAAGCTGA

Translation (192 aa):
MAAFRLPIYTAPPLHSKYVEEQPGNLQRGFASIRTTTVYYIGWCKSIYLFMKNGVMDTVQFGKDAYVYLK
NPPQDFLPKMGVITASGLAGLLSARKGSRFKKIAYPLGLATLGATVCYPAQSVIIAKEGRSDEIHASLPD
LKHSVSLPKELASATVIKSESTSGTTQFIPDPKLMDHGQSHPDDKDMYSTRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH