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Report for CCDS85841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85841.1 Public Mus musculus Y Rbmyf8 23 108 98 CCDS HistoryNCBI Gene:100862398Re-query CCDS DB by CCDS ID:85841.1Re-query CCDS DB by GeneID:100862398See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180310.1 ENSMUSP00000137266.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180310.1Link to Ensembl Protein Viewer:ENSMUSP00000137266.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180310Re-query CCDS DB by Protein ID:ENSMUSP00000137266
Original member Current member EBI ENSMUST00000190283.6 ENSMUSP00000139659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190283.6Link to Ensembl Protein Viewer:ENSMUSP00000139659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190283Re-query CCDS DB by Protein ID:ENSMUSP00000139659
Original member Current member EBI ENSMUST00000188091.6 ENSMUSP00000140216.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188091.6Link to Ensembl Protein Viewer:ENSMUSP00000140216.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188091Re-query CCDS DB by Protein ID:ENSMUSP00000140216
Original member Current member NCBI NM_001270516.1 NP_001257445.1 Accepted alive Link to Nucleotide Sequence:NM_001270516.1Link to Protein Sequence:NP_001257445.1Re-query CCDS DB by Nucleotide ID:NM_001270516Re-query CCDS DB by Protein ID:NP_001257445Link to BLAST:NP_001257445.1

Chromosomal Locations for CCDS 85841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 3399545 3399861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3400043 3400131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3400984 3401064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3402432 3402540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3403344 3403496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3405116 3405293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3406405 3406511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 3406959 3407067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCAGAAACTAATCAGCCTGGGAAAATTTTTATAGGAGGCCTCAACATAAAGACCAGACAAAAGACTC
TTCAAGAAATATTTGGGAGATTTGGACCAGTAGCACGTGTTATTTTGATGAGAGATCGTGAAACTAAGAA
GTCTAGAGGCTTTGCTTTCCTTACTTTCCGACGCCTTGCAGATGCTAAGAATGCTGTCAAAGAAATGAAT
GGAGTGATTTTGGATGGAAAAAGAATTAAAGTAAAACAAGCCAGGAGACCATCATCACTTGAAAGTGGTA
GCAAGAAGAGACCACCATCCTTTTCAAGAACCAGAGGTGCTTCAAGAATTCTGAAATGTGGAAGAGGAGG
AAGAAGCAGAGCAAGAAGTGGTCCTTCATGTGAAGGGAACTTGGGTGGTGATAGATATACTCCTAATTTC
AATGTGAGTTCTTCTGGGAGACACTTTGCAGTTAAAAGAAATCCATCTTCAAAAAGGGATGATCCCCCTT
CTAAAAGATCTGCAACTTCTGCTCAGACAAGAAGCAATACTGGACTAAGAGGACGAGAACCACATCGAAG
AGAGATTTCTAGAAATATGCCAAGAGGAGAGCCGGCGTCTTCCAGAAGAGATGAGTATCCATTACCAAGG
GATTATGGCCAGTCTTCTAATGATAGGAAATATGAATCAACATCCAGAGGATACTGTGACTATGGCAATT
ACCACTCTCGGGAAGAAAGTGCATCTAAAGTCTTCAGTGATCATGCTGGCTATCTTGGAGGACGTGATAG
AGATTTCTCTGAATATTTAAGTGGAAATTCATACAGAGATACATACAGAAGTTATGGAAGATTCCATGAG
GCACCATCTGCAAGAGGTGGAAACAACCGCTATGATGACTATAGTAACTCACAAGATGGATATGGTGGAA
GAGGAGAACCATACATAAGCAACCGAAGTAACATATACTCAAGTGACTATGAACGTAGTGGTAGACAAGA
AGTGCTTCCACCACCTATTGATAGGGAATACTTTGACCGTGAGGGCAGACAGGAAAGAGGGCATTCACCT
AAGGATGGGCTGTATAGTGCATCTCGTGAATCATACAGTAGTAATACCAAGATTTGGGGGATCCCATGGA
GGTCGTGGAGAAAGCAGATATAA

Translation (380 aa):
MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMN
GVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNF
NVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPR
DYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHE
APSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSP
KDGLYSASRESYSSNTKIWGIPWRSWRKQI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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