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Report for CCDS86352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86352.1 Public Homo sapiens 13 C13orf42 24 110 108 CCDS HistoryNCBI Gene:647166Re-query CCDS DB by CCDS ID:86352.1Re-query CCDS DB by GeneID:647166See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86352.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000563710.7 ENSP00000490517.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563710.7Link to Ensembl Protein Viewer:ENSP00000490517.1Re-query CCDS DB by Nucleotide ID:ENST00000563710Re-query CCDS DB by Protein ID:ENSP00000490517
Original member Current member NCBI NM_001351589.3 NP_001338518.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351589.3Link to Protein Sequence:NP_001338518.1Re-query CCDS DB by Nucleotide ID:NM_001351589Re-query CCDS DB by Protein ID:NP_001338518Link to BLAST:NP_001338518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338518.1 325 A0A1B0GVH6 325 100% 0 0

Chromosomal Locations for CCDS 86352.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51084151 51084325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51085319 51085559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51087928 51088075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51110796 51111209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGTTCAGAAAGATCCACTCCATCTTTAACTCCAGCCCACAGAGAAAGACGGCGGCCGAGAGCCCCTTCT
ACGAAGGAGCCAGCCCCGCAGTGAAGCTGATTCGAAGCAGTTCCATGTATGTGGTCGGGGACCACGGGGA
GAAATTCAGCGAGTCCTTAAAGAAGTACAAAAGCACCAGTAGCATGGACACCAGCCTGTACTACCTGCGG
CAGGAGGAGGACCGGGCGTGGATGTATTCGCGCACCCAGGACTGCCTGCAGTACCTGCAGGAGCTGCTGG
CCTTGCGCAAAAAATATCTCAGCAGCTTCAGTGATCTGAAGCCCCACCGCACCCAGGGGATTTCCTCAAC
CTCCTCCAAATCCTCCAAGGGAGGGAAAAAGACTCCTGTCCGGTCTACTCCCAAAGAAATAAAGAAAGCA
ACCCCAAAGAAATACTCGCAGTTCAGTGCTGATGTGGCCGAGGCCATTGCCTTCTTTGACTCCATCATTG
CAGAGCTGGATACAGAGAGACGACCCCGGGCTGCTGAGGCCAGCCTGCCAAATGAAGATGTGGACTTTGA
CGTGGCCACCAGCTCCAGGGAGCACAGCTTGCATTCTAACTGGATCCTGCGGGCACCGCGCAGACACTCC
GAGGATATCGCTGCCCACACTGTGCATACTGTAGACGGCCAGTTTCGAAGGAGCACCGAGCACAGGACCG
TGGGCACTCAGAGGAGACTCGAGAGGCACCCCATTTATTTGCCCAAGGCTGTGGAAGGGGCCTTCAACAC
CTGGAAATTTAAGCCCAAAGCCTGCAAAAAAGACCTGGGGAGCTCCAGACAGATCCTTTTCAACTTCTCA
GGAGAAGATATGGAGTGGGATGCAGAGCTCTTTGCGTTGGAGCCCCAGTTGTCTCCTGGGGAGGACTACT
ATGAGACAGAGAACCCCAAAGGACAGTGGCTGCTTCGAGAAAGACTTTGGGAGCGGACGGTGCCCTGA

Translation (325 aa):
MFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR
QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKA
TPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHS
EDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFS
GEDMEWDAELFALEPQLSPGEDYYETENPKGQWLLRERLWERTVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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